Volume 20, issue 1, December 2019
299 articles in this issue
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Divergent neuronal DNA methylation patterns across human cortical development reveal critical periods and a unique role of CpH methylation
Authors (first, second and last of 13)
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Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges
Authors (first, second and last of 14)
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A comparison of automatic cell identification methods for single-cell RNA sequencing data
Authors (first, second and last of 7)
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CUT&RUNTools: a flexible pipeline for CUT&RUN processing and footprint analysis
Authors (first, second and last of 4)
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Expanding the scope and scale of microbiome research
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TOAST: improving reference-free cell composition estimation by cross-cell type differential analysis
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Impact of poly(A)-tail G-content on Arabidopsis PAB binding and their role in enhancing translational efficiency
Authors (first, second and last of 12)
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Correction to: Spatial chromatin architecture alteration by structural variations in human genomes at the population scale
Authors (first, second and last of 7)
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Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes
Authors (first, second and last of 54)
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MITRE: inferring features from microbiota time-series data linked to host status
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Cytoscape Automation: empowering workflow-based network analysis
Authors (first, second and last of 5)
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Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacterial pathogens over 7 years in a single center
Authors (first, second and last of 16)
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MPRAnalyze: statistical framework for massively parallel reporter assays
Authors (first, second and last of 6)
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Correction to: Epigenetic signatures associated with imprinted paternally expressed genes in the Arabidopsis endosperm
Authors (first, second and last of 5)
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Raptor genomes reveal evolutionary signatures of predatory and nocturnal lifestyles
Authors (first, second and last of 24)
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A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types
Authors (first, second and last of 6)
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Genomic GPS: using genetic distance from individuals to public data for genomic analysis without disclosing personal genomes
Authors (first, second and last of 6)
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MetaCarvel: linking assembly graph motifs to biological variants
Authors (first, second and last of 5)
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Maturation of the infant rhesus macaque gut microbiome and its role in the development of diarrheal disease
Authors (first, second and last of 10)
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Regulation of rumen development in neonatal ruminants through microbial metagenomes and host transcriptomes
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Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation
Authors (first, second and last of 113)
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Diurnal regulation of SDG2 and JMJ14 by circadian clock oscillators orchestrates histone modification rhythms in Arabidopsis
Authors (first, second and last of 7)
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Benchmarking software tools for detecting and quantifying selection in evolve and resequencing studies
Authors (first, second and last of 7)
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An enhanced genetic model of colorectal cancer progression history
Authors (first, second and last of 9)
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AlleleAnalyzer: a tool for personalized and allele-specific sgRNA design
Authors (first, second and last of 6)
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scAlign: a tool for alignment, integration, and rare cell identification from scRNA-seq data
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BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes
Authors (first, second and last of 7)
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The bio.tools registry of software tools and data resources for the life sciences
Authors (first, second and last of 36)
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Analysis of Vibrio cholerae genomes identifies new type VI secretion system gene clusters
Authors (first, second and last of 10)
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Quantitative principles of cis-translational control by general mRNA sequence features in eukaryotes
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Correction to: Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta
Authors (first, second and last of 12)
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Correction to: Identification of novel Y chromosome encoded transcripts by testis transcriptome analysis of mice with deletions of the Y chromosome long arm
Authors (first, second and last of 10)
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A systematic assessment of current genome-scale metabolic reconstruction tools
Authors (first, second and last of 4)
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Linker histones are fine-scale chromatin architects modulating developmental decisions in Arabidopsis
Authors (first, second and last of 15)
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BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis
Authors (first, second and last of 10)
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MicroPro: using metagenomic unmapped reads to provide insights into human microbiota and disease associations
Authors (first, second and last of 4)
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Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation
Authors (first, second and last of 21)
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A statistical and biological response to an informatics appraisal of healthy aging gene signatures
Authors (first, second and last of 8)
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Alternative splicing is required for stage differentiation in malaria parasites
Authors (first, second and last of 9)
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Population dynamics of the human gut microbiome: change is the only constant
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