mRNA structural elements immediately upstream of the start codon dictate dependence upon eIF4A helicase activity
Authors (first, second and last of 10)
Volume 20, issue 1, December 2019
299 articles in this issue
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Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species
Authors (first, second and last of 12)
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A comparison framework and guideline of clustering methods for mass cytometry data
Authors (first, second and last of 7)
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Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model
Authors (first, second and last of 4)
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RADAR: differential analysis of MeRIP-seq data with a random effect model
Authors (first, second and last of 11)
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tmap: an integrative framework based on topological data analysis for population-scale microbiome stratification and association studies
Authors (first, second and last of 5)
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PIRCh-seq: functional classification of non-coding RNAs associated with distinct histone modifications
Authors (first, second and last of 13)
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Paragraph: a graph-based structural variant genotyper for short-read sequence data
Authors (first, second and last of 11)
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Quantifying the benefit offered by transcript assembly with Scallop-LR on single-molecule long reads
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Within-species contamination of bacterial whole-genome sequence data has a greater influence on clustering analyses than between-species contamination
Authors (first, second and last of 5)
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Whole genome DNA sequencing provides an atlas of somatic mutagenesis in healthy human cells and identifies a tumor-prone cell type
Authors (first, second and last of 15)
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TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools
Authors (first, second and last of 18)
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Systematic underestimation of the epigenetic clock and age acceleration in older subjects
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OnTAD: hierarchical domain structure reveals the divergence of activity among TADs and boundaries
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Guidelines for benchmarking of optimization-based approaches for fitting mathematical models
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HOPS: automated detection and authentication of pathogen DNA in archaeological remains
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PASTMUS: mapping functional elements at single amino acid resolution in human cells
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Transcriptome assembly from long-read RNA-seq alignments with StringTie2
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SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies
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Curing hemophilia A by NHEJ-mediated ectopic F8 insertion in the mouse
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Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
Authors (first, second and last of 13)
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deSALT: fast and accurate long transcriptomic read alignment with de Bruijn graph-based index
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Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference
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CTCF modulates allele-specific sub-TAD organization and imprinted gene activity at the mouse Dlk1-Dio3 and Igf2-H19 domains
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The Pseudomonas aeruginosa accessory genome elements influence virulence towards Caenorhabditis elegans
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Accuracy, robustness and scalability of dimensionality reduction methods for single-cell RNA-seq analysis
Authors (first, second and last of 4)
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The majority of A-to-I RNA editing is not required for mammalian homeostasis
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Chromosome-level genome assembly for giant panda provides novel insights into Carnivora chromosome evolution
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scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data
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eIF4A2 drives repression of translation at initiation by Ccr4-Not through purine-rich motifs in the 5′UTR
Authors (first, second and last of 15)
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ReorientExpress: reference-free orientation of nanopore cDNA reads with deep learning
Authors (first, second and last of 5)
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Characterizing the interplay between gene nucleotide composition bias and splicing
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547 transcriptomes from 44 brain areas reveal features of the aging brain in non-human primates
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Common DNA sequence variation influences 3-dimensional conformation of the human genome
Authors (first, second and last of 13)
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RegSNPs-intron: a computational framework for predicting pathogenic impact of intronic single nucleotide variants
Authors (first, second and last of 14)
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Pharmacogenomic analysis of patient-derived tumor cells in gynecologic cancers
Authors (first, second and last of 34)
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Gut-derived Enterococcus faecium from ulcerative colitis patients promotes colitis in a genetically susceptible mouse host
Authors (first, second and last of 15)
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MIA-Sig: multiplex chromatin interaction analysis by signal processing and statistical algorithms
Authors (first, second and last of 6)
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