JBrowse: a dynamic web platform for genome visualization and analysis
Authors (first, second and last of 11)
Volume 17, issue 1, December 2016
266 articles in this issue
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Erratum to: Understanding Brassicaceae evolution through ancestral genome reconstruction
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Design and computational analysis of single-cell RNA-sequencing experiments
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Systematic identification of genetic influences on methylation across the human life course
Authors (first, second and last of 14)
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Predicting the three-dimensional folding of cis-regulatory regions in mammalian genomes using bioinformatic data and polymer models
Authors (first, second and last of 8)
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Pro-inflammatory miR-223 mediates the cross-talk between the IL23 pathway and the intestinal barrier in inflammatory bowel disease
Authors (first, second and last of 11)
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Single-CpG resolution mapping of 5-hydroxymethylcytosine by chemical labeling and exonuclease digestion identifies evolutionarily unconserved CpGs as TET targets
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CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries
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4D nucleomes in single cells: what can computational modeling reveal about spatial chromatin conformation?
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The real cost of sequencing: scaling computation to keep pace with data generation
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Erratum to: Promoter-like epigenetic signatures in exons displaying cell type-specific splicing
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A probabilistic generative model for quantification of DNA modifications enables analysis of demethylation pathways
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Spatiotemporal variation of mammalian protein complex stoichiometries
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Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design
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Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants
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Depletion of Abundant Sequences by Hybridization (DASH): using Cas9 to remove unwanted high-abundance species in sequencing libraries and molecular counting applications
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HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure
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GATA3-dependent cellular reprogramming requires activation-domain dependent recruitment of a chromatin remodeler
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When (distant) relatives stay too long: implications for cancer medicine
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Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes
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deconstructSigs: delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution
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Classification of low quality cells from single-cell RNA-seq data
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Variation in 5-hydroxymethylcytosine across human cortex and cerebellum
Authors (first, second and last of 11)
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Erratum to: Genetic determination of height-mediated mate choice
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Genome-wide introgression among distantly related Heliconius butterfly species
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The aspirin-induced long non-coding RNA OLA1P2 blocks phosphorylated STAT3 homodimer formation
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Erratum to: Dynamics of gene silencing during X inactivation using allele-specific RNA-seq
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Erratum to: Genome-wide incorporation dynamics reveal distinct categories of turnover for the histone variant H3.3
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Characterization of chromatin accessibility with a transposome hypersensitive sites sequencing (THS-seq) assay
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Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs
Authors (first, second and last of 9)
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