Volume 17, issue 1, December 2016
266 articles in this issue
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The incredible complexity of RNA splicing
Authors
- Christelle Robert
- Mick Watson
- Content type: Research Highlight
- Open Access
- Published: 30 December 2016
- Article: 265
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Methylome evolution in plants
Authors (first, second and last of 6)
- Amaryllis Vidalis
- Daniel Živković
- Frank Johannes
- Content type: Review
- Open Access
- Published: 20 December 2016
- Article: 264
This is part of 1 collection: -
Erratum to: Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development
Authors (first, second and last of 10)
- Linda Szabo
- Robert Morey
- Julia Salzman
- Content type: Erratum
- Open Access
- Published: 19 December 2016
- Article: 263
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Erratum to: Rapid scoring of genes in microbial pan-genome-wide association studies with Scoary
Authors (first, second and last of 4)
- Ola Brynildsrud
- Jon Bohlin
- Vegard Eldholm
- Content type: Erratum
- Open Access
- Published: 19 December 2016
- Article: 262
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A novel independence test for somatic alterations in cancer shows that biology drives mutual exclusivity but chance explains most co-occurrence
Authors
- Sander Canisius
- John W. M. Martens
- Lodewyk F. A. Wessels
- Content type: METHOD
- Open Access
- Published: 16 December 2016
- Article: 261
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IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses
Authors (first, second and last of 10)
- Shaman Narayanasamy
- Yohan Jarosz
- Paul Wilmes
- Content type: Software
- Open Access
- Published: 16 December 2016
- Article: 260
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TET enzymes: double agents in the transposable element–host genome conflict
Authors
- Patricia Gerdes
- Sandra R. Richardson
- Geoffrey J. Faulkner
- Content type: Research Highlight
- Open Access
- Published: 20 December 2016
- Article: 259
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The genome of the Gulf pipefish enables understanding of evolutionary innovations
Authors (first, second and last of 8)
- C. M. Small
- S. Bassham
- W. A. Cresko
- Content type: Research
- Open Access
- Published: 20 December 2016
- Article: 258
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Human sex development: targeted technologies to improve diagnosis
Authors
- Federica Buonocore
- John C. Achermann
- Content type: Research Highlight
- Open Access
- Published: 15 December 2016
- Article: 257
This is part of 1 collection: -
Erratum to: The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
Authors (first, second and last of 4)
- Miten Jain
- Hugh E. Olsen
- Mark Akeson
- Content type: Erratum
- Open Access
- Published: 13 December 2016
- Article: 256
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DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases
Authors (first, second and last of 89)
- Symen Ligthart
- Carola Marzi
- Abbas Dehghan
- Content type: Method
- Open Access
- Published: 12 December 2016
- Article: 255
This is part of 1 collection: -
Ten years of the Genomics of Common Diseases: “The end of the beginning”
Authors
- Chris S. Haley
- Content type: Meeting Report
- Open Access
- Published: 09 December 2016
- Article: 254
This is part of 1 collection: -
Trends and challenges in computational RNA biology
Authors
- Alina Selega
- Guido Sanguinetti
- Content type: MEETING REPORT
- Open Access
- Published: 07 December 2016
- Article: 253
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DIVAN: accurate identification of non-coding disease-specific risk variants using multi-omics profiles
Authors
- Li Chen
- Peng Jin
- Zhaohui S. Qin
- Content type: Method
- Open Access
- Published: 06 December 2016
- Article: 252
This is part of 1 collection: -
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
Authors (first, second and last of 50)
- Federico Abascal
- André Corvelo
- José A. Godoy
- Content type: Research
- Open Access
- Published: 14 December 2016
- Article: 251
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Tracing the origin of disseminated tumor cells in breast cancer using single-cell sequencing
Authors (first, second and last of 20)
- Jonas Demeulemeester
- Parveen Kumar
- Bjørn Naume
- Content type: Research
- Open Access
- Published: 09 December 2016
- Article: 250
This is part of 1 collection: -
Erratum to: Estimating the population abundance of tissue-infiltrating immune and stromal cell populations using gene expression
Authors (first, second and last of 11)
- Etienne Becht
- Nicolas A. Giraldo
- Aurélien de Reyniès
- Content type: Erratum
- Open Access
- Published: 01 December 2016
- Article: 249
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Autosomal genetic control of human gene expression does not differ across the sexes
Authors (first, second and last of 15)
- Irfahan Kassam
- Luke Lloyd-Jones
- Allan F. McRae
- Content type: Research
- Open Access
- Published: 01 December 2016
- Article: 248
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Systematic analysis of chromatin interactions at disease associated loci links novel candidate genes to inflammatory bowel disease
Authors (first, second and last of 10)
- Claartje A. Meddens
- Magdalena Harakalova
- Michal Mokry
- Content type: Research
- Open Access
- Published: 30 November 2016
- Article: 247
This is part of 1 collection: -
Adaptively introgressed Neandertal haplotype at the OAS locus functionally impacts innate immune responses in humans
Authors (first, second and last of 8)
- Aaron J. Sams
- Anne Dumaine
- Luis B. Barreiro
- Content type: Research
- Open Access
- Published: 29 November 2016
- Article: 246
This is part of 1 collection: -
Rare and common epilepsies converge on a shared gene regulatory network providing opportunities for novel antiepileptic drug discovery
Authors (first, second and last of 15)
- Andree Delahaye-Duriez
- Prashant Srivastava
- Michael R. Johnson
- Content type: Research
- Open Access
- Published: 13 December 2016
- Article: 245
This is part of 1 collection: -
Fruitful analysis of sex chromosomes reveals X-treme genetic diversity
Authors
- Angela M. Taravella
- Melissa A. Wilson Sayres
- Content type: Research Highlight
- Open Access
- Published: 29 November 2016
- Article: 244
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Disorders of sex development: insights from targeted gene sequencing of a large international patient cohort
Authors (first, second and last of 73)
- Stefanie Eggers
- Simon Sadedin
- Andrew H. Sinclair
- Content type: Research
- Open Access
- Published: 29 November 2016
- Article: 243
This is part of 1 collection: -
Characterizing the morbid genome of ciliopathies
Authors (first, second and last of 40)
- Ranad Shaheen
- Katarzyna Szymanska
- Fowzan S. Alkuraya
- Content type: Research
- Open Access
- Published: 28 November 2016
- Article: 242
This is part of 1 collection: -
New insights into the generation and role of de novo mutations in health and disease
Authors
- Rocio Acuna-Hidalgo
- Joris A. Veltman
- Alexander Hoischen
- Content type: Review
- Open Access
- Published: 28 November 2016
- Article: 241
This is part of 1 collection: -
Functional and regulatory profiling of energy metabolism in fission yeast
Authors (first, second and last of 7)
- Michal Malecki
- Danny A. Bitton
- Jürg Bähler
- Content type: Research
- Open Access
- Published: 25 November 2016
- Article: 240
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The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
Authors (first, second and last of 4)
- Miten Jain
- Hugh E. Olsen
- Mark Akeson
- Content type: Opinion
- Open Access
- Published: 25 November 2016
- Article: 239
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Rapid scoring of genes in microbial pan-genome-wide association studies with Scoary
Authors (first, second and last of 4)
- Ola Brynildsrud
- Jon Bohlin
- Vegard Eldholm
- Content type: Software
- Open Access
- Published: 25 November 2016
- Article: 238
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Whole genome sequence analysis of serum amino acid levels
Authors (first, second and last of 11)
- Bing Yu
- Paul S. de Vries
- Eric Boerwinkle
- Content type: Research
- Open Access
- Published: 24 November 2016
- Article: 237
This is part of 1 collection: -
Patterns of ribosomal protein expression specify normal and malignant human cells
Authors
- Joao C. Guimaraes
- Mihaela Zavolan
- Content type: Research
- Open Access
- Published: 24 November 2016
- Article: 236
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Revisiting the morbid genome of Mendelian disorders
Authors (first, second and last of 4)
- Mohamed Abouelhoda
- Tariq Faquih
- Fowzan S. Alkuraya
- Content type: Research
- Open Access
- Published: 24 November 2016
- Article: 235
This is part of 1 collection: -
TET-dependent regulation of retrotransposable elements in mouse embryonic stem cells
Authors (first, second and last of 7)
- Lorenzo de la Rica
- Özgen Deniz
- Miguel R. Branco
- Content type: Research
- Open Access
- Published: 18 November 2016
- Article: 234
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The continuum of causality in human genetic disorders
Authors
- Nicholas Katsanis
- Content type: Opinion
- Open Access
- Published: 17 November 2016
- Article: 233
This is part of 1 collection: -
A novel codon-based de Bruijn graph algorithm for gene construction from unassembled transcriptomes
Authors
- Gongxin Peng
- Peifeng Ji
- Fangqing Zhao
- Content type: Method
- Open Access
- Published: 17 November 2016
- Article: 232
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Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures
Authors (first, second and last of 29)
- Yasin Şenbabaoğlu
- Ron S. Gejman
- A. Ari Hakimi
- Content type: Research
- Open Access
- Published: 17 November 2016
- Article: 231
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Extremely low nucleotide diversity in the X-linked region of papaya caused by a strong selective sweep
Authors (first, second and last of 13)
- Robert VanBuren
- Ching Man Wai
- Ray Ming
- Content type: Research
- Open Access
- Published: 28 November 2016
- Article: 230
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Choosing panels of genomics assays using submodular optimization
Authors (first, second and last of 4)
- Kai Wei
- Maxwell W. Libbrecht
- William Stafford Noble
- Content type: METHOD
- Open Access
- Published: 15 November 2016
- Article: 229
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Integrative analysis of genetic data sets reveals a shared innate immune component in autism spectrum disorder and its co-morbidities
Authors (first, second and last of 4)
- Sumaiya Nazeen
- Nathan P. Palmer
- Isaac S. Kohane
- Content type: Research
- Open Access
- Published: 14 November 2016
- Article: 228
This is part of 1 collection: -
Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle–plant interface
Authors (first, second and last of 67)
- Duane D. McKenna
- Erin D. Scully
- Stephen Richards
- Content type: Research
- Open Access
- Published: 11 November 2016
- Article: 227
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Dietary nitrogen alters codon bias and genome composition in parasitic microorganisms
Authors
- Emily A. Seward
- Steven Kelly
- Content type: Research
- Open Access
- Published: 15 November 2016
- Article: 226
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Understanding rare and common diseases in the context of human evolution
Authors
- Lluis Quintana-Murci
- Content type: Review
- Open Access
- Published: 07 November 2016
- Article: 225
This is part of 1 collection: -
Erratum to: DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns
Authors (first, second and last of 11)
- Kaie Lokk
- Vijayachitra Modhukur
- Neeme Tönisson
- Content type: Erratum
- Open Access
- Published: 01 November 2016
- Article: 224
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The draft genome of the C3 panicoid grass species Dichanthelium oligosanthes
Authors (first, second and last of 9)
- Anthony J. Studer
- James C. Schnable
- Thomas P. Brutnell
- Content type: Research
- Open Access
- Published: 28 October 2016
- Article: 223
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A statistical approach for identifying differential distributions in single-cell RNA-seq experiments
Authors (first, second and last of 7)
- Keegan D. Korthauer
- Li-Fang Chu
- Christina Kendziorski
- Content type: METHOD
- Open Access
- Published: 25 October 2016
- Article: 222
This is part of 1 collection: -
Rapid gene isolation in barley and wheat by mutant chromosome sequencing
Authors (first, second and last of 13)
- Javier Sánchez-Martín
- Burkhard Steuernagel
- Brande B. H. Wulff
- Content type: Method
- Open Access
- Published: 31 October 2016
- Article: 221
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Transcriptome-wide effects of inverted SINEs on gene expression and their impact on RNA polymerase II activity
Authors (first, second and last of 11)
- Mansoureh Tajaddod
- Andrea Tanzer
- Michael F. Jantsch
- Content type: Research
- Open Access
- Published: 25 October 2016
- Article: 220
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Extensive RNA editing and splicing increase immune self-representation diversity in medullary thymic epithelial cells
Authors (first, second and last of 5)
- Miri Danan-Gotthold
- Clotilde Guyon
- Jakub Abramson
- Content type: Research
- Open Access
- Published: 24 October 2016
- Article: 219
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Estimating the population abundance of tissue-infiltrating immune and stromal cell populations using gene expression
Authors (first, second and last of 11)
- Etienne Becht
- Nicolas A. Giraldo
- Aurélien de Reyniès
- Content type: Method
- Open Access
- Published: 20 October 2016
- Article: 218
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Tiny microbes, enormous impacts: what matters in gut microbiome studies?
Authors (first, second and last of 6)
- Justine Debelius
- Se Jin Song
- Rob Knight
- Content type: Review
- Open Access
- Published: 19 October 2016
- Article: 217