Volume 15, issue 11, November 2014
29 articles in this issue
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Genome Informatics 2014
Authors
- Jared T Simpson
- Content type: Meeting report
- Open Access
- Published: 22 November 2014
- Article: 543
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Genomic analysis of emerging pathogens: methods, application and future trends
Authors
- Lucy M Li
- Nicholas C Grassly
- Christophe Fraser
- Content type: Review
- Open Access
- Published: 22 November 2014
- Article: 541
This is part of 1 collection: -
Elucidating variations in the nucleotide sequence of Ebola virus associated with increasing pathogenicity
Authors (first, second and last of 14)
- Stuart D Dowall
- David A Matthews
- Julian A Hiscox
- Content type: Research
- Open Access
- Published: 22 November 2014
- Article: 540
This is part of 1 collection: -
Epidemiologic data and pathogen genome sequences: a powerful synergy for public health
Authors
- Yonatan H Grad
- Marc Lipsitch
- Content type: Review
- Open Access
- Published: 18 November 2014
- Article: 538
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Engineering the control of mosquito-borne infectious diseases
Authors
- Paolo Gabrieli
- Andrea Smidler
- Flaminia Catteruccia
- Content type: Review
- Open Access
- Published: 15 November 2014
- Article: 535
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Proteomics informed by transcriptomics reveals Hendra virus sensitizes bat cells to TRAIL-mediated apoptosis
Authors (first, second and last of 18)
- James W Wynne
- Brian J Shiell
- Lin-Fa Wang
- Content type: Research
- Open Access
- Published: 15 November 2014
- Article: 532
This is part of 1 collection: -
Human infectious diseases in the genomics era: where do we go from here?
Authors
- Ripudaman K Bains
- Content type: Editorial
- Open Access
- Published: 22 November 2014
- Article: 529
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Next-generation pathogen genomics
Authors
- George M Weinstock
- Sharon J Peacock
- Content type: Editorial
- Open Access
- Published: 19 November 2014
- Article: 528
This is part of 1 collection: -
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes
Authors (first, second and last of 4)
- Todd J Treangen
- Brian D Ondov
- Adam M Phillippy
- Content type: Software
- Open Access
- Published: 19 November 2014
- Article: 524
This is part of 1 collection: -
The road to drug resistance in Mycobacterium tuberculosis
Authors
- Anastasia Koch
- Robert John Wilkinson
- Content type: Research highlight
- Open Access
- Published: 13 November 2014
- Article: 520
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Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples
Authors (first, second and last of 27)
- Christian B Matranga
- Kristian G Andersen
- Pardis C Sabeti
- Content type: Method
- Open Access
- Published: 18 November 2014
- Article: 519
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BAsE-Seq: a method for obtaining long viral haplotypes from short sequence reads
Authors (first, second and last of 12)
- Lewis Z Hong
- Shuzhen Hong
- William F Burkholder
- Content type: Method
- Open Access
- Published: 19 November 2014
- Article: 517
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A CRISPR design for next-generation antimicrobials
Authors
- Chase L Beisel
- Ahmed A Gomaa
- Rodolphe Barrangou
- Content type: Research highlight
- Open Access
- Published: 08 November 2014
- Article: 516
This is part of 1 collection: -
Empowering African genomics for infectious disease control
Authors
- Onikepe A Folarin
- Anise N Happi
- Christian T Happi
- Content type: Comment
- Open Access
- Published: 07 November 2014
- Article: 515
This is part of 1 collection: -
Translating genomics research into control of tuberculosis: lessons learned and future prospects
Authors
- Digby F Warner
- Valerie Mizrahi
- Content type: Review
- Open Access
- Published: 07 November 2014
- Article: 514
This is part of 1 collection: -
A genomic and evolutionary approach reveals non-genetic drug resistance in malaria
Authors (first, second and last of 12)
- Jonathan D Herman
- Daniel P Rice
- Dyann F Wirth
- Content type: Research
- Open Access
- Published: 14 November 2014
- Article: 511
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The genome of the sparganosis tapeworm Spirometra erinaceieuropaeiisolated from the biopsy of a migrating brain lesion
Authors (first, second and last of 20)
- Hayley M Bennett
- Hoi Ping Mok
- Matthew Berriman
- Content type: Research
- Open Access
- Published: 21 November 2014
- Article: 510
This is part of 1 collection: -
Lighter: fast and memory-efficient sequencing error correction without counting
Authors
- Li Song
- Liliana Florea
- Ben Langmead
- Content type: Software
- Open Access
- Published: 15 November 2014
- Article: 509
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Bringing non-human primate research into the post-genomic era: how monkeys are teaching us about elite controllers of HIV/AIDS
Authors
- Eric J Vallender
- Content type: Research highlight
- Open Access
- Published: 07 November 2014
- Article: 507
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Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica
Authors (first, second and last of 15)
- Michael C Schatz
- Lyza G Maron
- W Richard McCombie
- Content type: Research
- Open Access
- Published: 03 December 2014
- Article: 506
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Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires’ disease
Authors (first, second and last of 19)
- Laura Gomez-Valero
- Christophe Rusniok
- Carmen Buchrieser
- Content type: Research
- Open Access
- Published: 03 November 2014
- Article: 505
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Gene flow in environmental Legionella pneumophila leads to genetic and pathogenic heterogeneity within a Legionnaires’ disease outbreak
Authors (first, second and last of 10)
- Paul R McAdam
- Charles W Vander Broek
- J Ross Fitzgerald
- Content type: Research
- Open Access
- Published: 03 November 2014
- Article: 504
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Functional normalization of 450k methylation array data improves replication in large cancer studies
Authors (first, second and last of 8)
- Jean-Philippe Fortin
- Aurélie Labbe
- Kasper D Hansen
- Content type: METHOD
- Open Access
- Published: 03 December 2014
- Article: 503
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Mapping and manipulating the Mycobacterium tuberculosis transcriptome using a transcription factor overexpression-derived regulatory network
Authors (first, second and last of 11)
- Tige R Rustad
- Kyle J Minch
- David R Sherman
- Content type: Research
- Open Access
- Published: 03 November 2014
- Article: 502
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Erratum to: The RNA editing enzyme APOBEC1 induces somatic mutations and a compatible mutational signature is present in esophageal adenocarcinomas
Authors (first, second and last of 5)
- Giulia Saraconi
- Francesco Severi
- Silvestro G Conticello
- Content type: Erratum
- Open Access
- Published: 08 November 2014
- Article: 497
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Genome-wide RIP-Chip analysis of translational repressor-bound mRNAs in the Plasmodium gametocyte
Authors (first, second and last of 11)
- Ana Guerreiro
- Elena Deligianni
- Gunnar R Mair
- Content type: Research
- Open Access
- Published: 03 November 2014
- Article: 493
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Evolution of extensively drug-resistant Mycobacterium tuberculosisfrom a susceptible ancestor in a single patient
Authors (first, second and last of 10)
- Vegard Eldholm
- Gunnstein Norheim
- Francois Balloux
- Content type: Research
- Open Access
- Published: 07 November 2014
- Article: 490
This is part of 1 collection: -
Whole genome sequencing of SIV-infected macaques identifies candidate loci that may contribute to host control of virus replication
Authors (first, second and last of 19)
- Adam J Ericsen
- Gabriel J Starrett
- David H O’Connor
- Content type: Research
- Open Access
- Published: 07 November 2014
- Article: 478
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