Volume 8, issue 5, May 2007
37 articles in this issue
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Conversion of amino-acid sequence in proteins to classical music: search for auditory patterns
Authors
- Rie Takahashi
- Jeffrey H Miller
- Content type: Correspondence
- Published: 03 May 2007
- Article: 405
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Chickens get their place in the sun
Authors
- Charalampos Rallis
- Content type: Meeting report
- Published: 25 May 2007
- Article: 306
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The fungal frontier
Authors
- Jill R Blankenship
- Aaron P Mitchell
- Content type: Meeting report
- Published: 22 May 2007
- Article: 305
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The integrins
Authors
- Yoshikazu Takada
- Xiaojing Ye
- Scott Simon
- Content type: Protein family review
- Published: 01 June 2007
- Article: 215
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A rational route to probing membrane proteins
Authors
- Amy E Keating
- Content type: Minireview
- Published: 31 May 2007
- Article: 214
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Evaluating dosage compensation as a cause of duplicate gene retention in Paramecium tetraurelia
Authors (first, second and last of 5)
- Timothy Hughes
- Diana Ekman
- David A Liberles
- Content type: Minireview
- Published: 22 May 2007
- Article: 213
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Mouse maps of gene expression in the brain
Authors
- Susan E Koester
- Thomas R Insel
- Content type: Minireview
- Published: 18 May 2007
- Article: 212
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Inconvenient truths
Authors
- Gregory A Petsko
- Content type: Comment
- Published: 31 May 2007
- Article: 106
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ngLOC: an n-gram-based Bayesian method for estimating the subcellular proteomes of eukaryotes
Authors
- Brian R King
- Chittibabu Guda
- Content type: Method
- Open Access
- Published: 01 May 2007
- Article: R68
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Towards the uniform distribution of null P values on Affymetrix microarrays
Authors
- Anthony A Fodor
- Timothy L Tickle
- Christine Richardson
- Content type: Method
- Open Access
- Published: 01 May 2007
- Article: R69
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Decline of nucleotide excision repair capacity in aging Caenorhabditis elegans
Authors (first, second and last of 6)
- Joel N Meyer
- Windy A Boyd
- Bennett Van Houten
- Content type: Research
- Open Access
- Published: 01 May 2007
- Article: R70
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Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition
Authors
- Tristan Lefébure
- Michael J Stanhope
- Content type: Research
- Open Access
- Published: 02 May 2007
- Article: R71
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Gene expression analysis of nuclear factor I-A deficient mice indicates delayed brain maturation
Authors (first, second and last of 6)
- Yong Wee Wong
- Christian Schulze
- Thomas Tilling
- Content type: Research
- Open Access
- Published: 02 May 2007
- Article: R72
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Global transcriptional responses of fission and budding yeast to changes in copper and iron levels: a comparative study
Authors (first, second and last of 7)
- Gabriella Rustici
- Harm van Bakel
- Alvis Brazma
- Content type: Research
- Open Access
- Published: 03 May 2007
- Article: R73
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Threshold-free high-power methods for the ontological analysis of genome-wide gene-expression studies
Authors (first, second and last of 5)
- Björn Nilsson
- Petra HÃ¥kansson
- Thoas Fioretos
- Content type: Method
- Open Access
- Published: 08 May 2007
- Article: R74
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cis-Decoder discovers constellations of conserved DNA sequences shared among tissue-specific enhancers
Authors (first, second and last of 6)
- Thomas Brody
- Wayne Rasband
- Ward F Odenwald
- Content type: Method
- Open Access
- Published: 09 May 2007
- Article: R75
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Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors
Authors (first, second and last of 26)
- Jason I Herschkowitz
- Karl Simin
- Charles M Perou
- Content type: Research
- Open Access
- Published: 10 May 2007
- Article: R76
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Revealing signaling pathway deregulation by using gene expression signatures and regulatory motif analysis
Authors
- Yingchun Liu
- Markus Ringnér
- Content type: Method
- Open Access
- Published: 11 May 2007
- Article: R77
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Genome-wide identification of novel expression signatures reveal distinct patterns and prevalence of binding motifs for p53, nuclear factor-κB and other signal transcription factors in head and neck squamous cell carcinoma
Authors (first, second and last of 7)
- Bin Yan
- Xinping Yang
- Zhong Chen
- Content type: Research
- Open Access
- Published: 11 May 2007
- Article: R78
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An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data
Authors (first, second and last of 4)
- Michał J Okoniewski
- Tim Yates
- Crispin J Miller
- Content type: Software
- Open Access
- Published: 11 May 2007
- Article: R79
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Species-wide distribution of highly polymorphic minisatellite markers suggests past and present genetic exchanges among house mouse subspecies
Authors (first, second and last of 6)
- François Bonhomme
- Eric Rivals
- Philippe RJ Bois
- Content type: Research
- Open Access
- Published: 14 May 2007
- Article: R80
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Tilescope: online analysis pipeline for high-density tiling microarray data
Authors (first, second and last of 6)
- Zhengdong D Zhang
- Joel Rozowsky
- Mark Gerstein
- Content type: Software
- Open Access
- Published: 14 May 2007
- Article: R81
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Exon arrays provide accurate assessments of gene expression
Authors (first, second and last of 4)
- Karen Kapur
- Yi Xing
- Wing Hung Wong
- Content type: Method
- Open Access
- Published: 15 May 2007
- Article: R82
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A distance difference matrix approach to identifying transcription factors that regulate differential gene expression
Authors (first, second and last of 4)
- Pieter De Bleser
- Bart Hooghe
- Frans van Roy
- Content type: Method
- Open Access
- Published: 16 May 2007
- Article: R83
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Regulatory conservation of protein coding and microRNA genes in vertebrates: lessons from the opossum genome
Authors (first, second and last of 4)
- Shaun Mahony
- David L Corcoran
- Panayiotis V Benos
- Content type: Research
- Open Access
- Published: 16 May 2007
- Article: R84
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A global view of gene expression in lithium and zinc treated sea urchin embryos: new components of gene regulatory networks
Authors (first, second and last of 9)
- Albert J Poustka
- Alexander Kühn
- Georgia Panopoulou
- Content type: Research
- Open Access
- Published: 16 May 2007
- Article: R85
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Characterizing the expression of the human olfactory receptor gene family using a novel DNA microarray
Authors (first, second and last of 6)
- Xiaohong Zhang
- Omar De la Cruz
- Yoav Gilad
- Content type: Research
- Open Access
- Published: 17 May 2007
- Article: R86
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Monitoring of gene knockouts: genome-wide profiling of conditionally essential genes
Authors (first, second and last of 5)
- Lisa K Smith
- Maria J Gomez
- Alexander A Neyfakh
- Content type: Method
- Open Access
- Published: 22 May 2007
- Article: R87
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Analysis of 14 BAC sequences from the Aedes aegyptigenome: a benchmark for genome annotation and assembly
Authors (first, second and last of 9)
- Neil F Lobo
- Kathy S Campbell
- Frank H Collins
- Content type: Research
- Open Access
- Published: 22 May 2007
- Article: R88
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GSMN-TB: a web-based genome-scale network model of Mycobacterium tuberculosismetabolism
Authors (first, second and last of 10)
- Dany JV Beste
- Tracy Hooper
- Johnjoe McFadden
- Content type: Research
- Open Access
- Published: 23 May 2007
- Article: R89
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A systematic comparative and structural analysis of protein phosphorylation sites based on the mtcPTM database
Authors (first, second and last of 5)
- José L Jiménez
- Björn Hegemann
- Richard Durbin
- Content type: Software
- Open Access
- Published: 23 May 2007
- Article: R90
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Gene expression variation in Down's syndrome mice allows prioritization of candidate genes
Authors (first, second and last of 8)
- Marc Sultan
- Ilaria Piccini
- Marie-Laure Yaspo
- Content type: Research
- Open Access
- Published: 25 May 2007
- Article: R91
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Modular architecture of protein structures and allosteric communications: potential implications for signaling proteins and regulatory linkages
Authors (first, second and last of 4)
- Antonio del Sol
- Marcos J Araúzo-Bravo
- Ruth Nussinov
- Content type: Research
- Open Access
- Published: 25 May 2007
- Article: R92
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Optimization and clinical validation of a pathogen detection microarray
Authors (first, second and last of 9)
- Christopher W Wong
- Charlie Lee Wah Heng
- Lance D Miller
- Content type: Method
- Open Access
- Published: 28 May 2007
- Article: R93
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Modular organization in the reductive evolution of protein-protein interaction networks
Authors
- Javier Tamames
- Andrés Moya
- Alfonso Valencia
- Content type: Research
- Open Access
- Published: 28 May 2007
- Article: R94
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Unequal evolutionary conservation of human protein interactions in interologous networks
Authors
- Kevin R Brown
- Igor Jurisica
- Content type: Research
- Open Access
- Published: 29 May 2007
- Article: R95