Circlator: automated circularization of genome assemblies using long sequencing reads
Authors (first, second and last of 6)
Volume 16, issue 1, December 2015
294 articles in this issue
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KIAA0556 is a novel ciliary basal body component mutated in Joubert syndrome
Authors (first, second and last of 32)
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High density methylation QTL analysis in human blood via next-generation sequencing of the methylated genomic DNA fraction
Authors (first, second and last of 14)
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Population whole-genome bisulfite sequencing across two tissues highlights the environment as the principal source of human methylome variation
Authors (first, second and last of 20)
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Local compartment changes and regulatory landscape alterations in histone H1-depleted cells
Authors (first, second and last of 16)
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3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process
Authors (first, second and last of 7)
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Transcriptome analysis in calorie-restricted rats implicates epigenetic and post-translational mechanisms in neuroprotection and aging
Authors (first, second and last of 7)
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A novel ATAC-seq approach reveals lineage-specific reinforcement of the open chromatin landscape via cooperation between BAF and p63
Authors (first, second and last of 7)
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Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling
Authors (first, second and last of 7)
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Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR
Authors (first, second and last of 8)
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Optimizing sgRNA structure to improve CRISPR-Cas9 knockout efficiency
Authors (first, second and last of 8)
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Metagenome-assembled genomes uncover a global brackish microbiome
Authors (first, second and last of 7)
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MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data
Authors (first, second and last of 12)
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The microbiome quality control project: baseline study design and future directions
Authors (first, second and last of 5)
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Erratum to: Long non-coding RNA ROR decoys gene-specific histone methylation to promote tumorigenesis
Authors (first, second and last of 13)
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Transcriptome-wide high-throughput deep m6A-seq reveals unique differential m6A methylation patterns between three organs in Arabidopsis thaliana
Authors (first, second and last of 7)
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Erratum to: Deep sequencing and de novo assembly of the mouse occyte transcriptome define the contribution of transcription to the DNA methylation landscape
Authors (first, second and last of 10)
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Erratum to: Visualizing translocation dynamics and nascent transcript errors in paused RNA polymerases in vivo
Authors (first, second and last of 7)
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Liver ChIP-seq analysis in FGF19-treated mice reveals SHP as a global transcriptional partner of SREBP-2
Authors (first, second and last of 7)
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Loss of function of myosin chaperones triggers Hsf1-mediated transcriptional response in skeletal muscle cells
Authors (first, second and last of 6)
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Lifetime stress accelerates epigenetic aging in an urban, African American cohort: relevance of glucocorticoid signaling
Authors (first, second and last of 18)
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Identification of low abundance microbiome in clinical samples using whole genome sequencing
Authors (first, second and last of 9)
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Glucocorticoid receptor and nuclear factor kappa-b affect three-dimensional chromatin organization
Authors (first, second and last of 13)
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Trans effects of chromosome aneuploidies on DNA methylation patterns in human Down syndrome and mouse models
Authors (first, second and last of 22)
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Understanding Brassicaceae evolution through ancestral genome reconstruction
Authors (first, second and last of 8)
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Erratum to: Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data
Authors (first, second and last of 9)
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HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
Authors (first, second and last of 9)
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Induction of targeted, heritable mutations in barley and Brassica oleracea using RNA-guided Cas9 nuclease
Authors (first, second and last of 8)
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Characterization of Staphylococcus aureus Cas9: a smaller Cas9 for all-in-one adeno-associated virus delivery and paired nickase applications
Authors (first, second and last of 16)
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Accelerating research through reagent repositories: the genome editing example
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Rapid characterization of CRISPR-Cas9 protospacer adjacent motif sequence elements
Authors (first, second and last of 7)
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P16-specific DNA methylation by engineered zinc finger methyltransferase inactivates gene transcription and promotes cancer metastasis
Authors (first, second and last of 7)
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Zinc finger nuclease-based double-strand breaks attenuate malaria parasites and reveal rare microhomology-mediated end joining
Authors (first, second and last of 7)
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A transient ischemic environment induces reversible compaction of chromatin
Authors (first, second and last of 12)
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Spatio-temporal regulation of circular RNA expression during porcine embryonic brain development
Authors (first, second and last of 8)
