Volume 15, issue 1, January 2014
31 articles in this issue
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'Oming in on RNA–protein interactions
Authors
- John L Rinn
- Jernej Ule
- Content type: Editorial
- Published: 31 January 2014
- Article: 401
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Next-generation plant science: putting big data to work
Authors
- Elizabeth K Brauer
- Dharmendra K Singh
- Sorina C Popescu
- Content type: Meeting report
- Open Access
- Published: 15 January 2014
- Article: 301
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To be or not to be a piRNA: genomic origin and processing of piRNAs
Authors
- Adrien Le Thomas
- Katalin Fejes Tóth
- Alexei A Aravin
- Content type: Review
- Open Access
- Published: 27 January 2014
- Article: 204
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Methods for comprehensive experimental identification of RNA-protein interactions
Authors
- Colleen A McHugh
- Pamela Russell
- Mitchell Guttman
- Content type: Review
- Open Access
- Published: 27 January 2014
- Article: 203
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Seq and CLIP through the miRNA world
Authors
- Nitish Mittal
- Mihaela Zavolan
- Content type: Review
- Open Access
- Published: 25 January 2014
- Article: 202
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Exon identity crisis: disease-causing mutations that disrupt the splicing code
Authors
- Timothy Sterne-Weiler
- Jeremy R Sanford
- Content type: Review
- Open Access
- Published: 23 January 2014
- Article: 201
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Identification of evolutionarily meaningful information within the mammalian RNA editing landscape
Authors
- Yiannis A Savva
- Robert A Reenan
- Content type: Research highlight
- Open Access
- Published: 28 January 2014
- Article: 103
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Of RNA-binding proteins and their targets: interaction determines expression
Authors
- Bojan Zagrovic
- Content type: Research highlight
- Open Access
- Published: 27 January 2014
- Article: 102
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Smaug destroys a huge treasure
Authors
- Michael Götze
- Elmar Wahle
- Content type: Research highlight
- Open Access
- Published: 27 January 2014
- Article: 101
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Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis
Authors (first, second and last of 5)
- Peng Cui
- Shoudong Zhang
- Liming Xiong
- Content type: Research
- Open Access
- Published: 07 January 2014
- Article: R1
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Advancing the functional utility of PAR-CLIP by quantifying background binding to mRNAs and lncRNAs
Authors
- Matthew B Friedersdorf
- Jack D Keene
- Content type: Research
- Open Access
- Published: 07 January 2014
- Article: R2
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Global regulation of mRNA translation and stability in the early Drosophilaembryo by the Smaug RNA-binding protein
Authors (first, second and last of 11)
- Linan Chen
- Jason G Dumelie
- Craig A Smibert
- Content type: Research
- Open Access
- Published: 07 January 2014
- Article: R4
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Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes
Authors (first, second and last of 10)
- Sebastiaan van Heesch
- Maarten van Iterson
- Marieke Simonis
- Content type: Research
- Open Access
- Published: 07 January 2014
- Article: R6
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RIP-seq analysis of eukaryotic Sm proteins identifies three major categories of Sm-containing ribonucleoproteins
Authors (first, second and last of 4)
- Zhipeng Lu
- Xiaojun Guan
- A Gregory Matera
- Content type: Research
- Open Access
- Published: 07 January 2014
- Article: R7
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PAR-CLIP data indicate that Nrd1-Nab3-dependent transcription termination regulates expression of hundreds of protein coding genes in yeast
Authors (first, second and last of 4)
- Shaun Webb
- Ralph D Hector
- Sander Granneman
- Content type: Research
- Open Access
- Published: 07 January 2014
- Article: R8
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Constitutive patterns of gene expression regulated by RNA-binding proteins
Authors (first, second and last of 6)
- Davide Cirillo
- Domenica Marchese
- Gian Gaetano Tartaglia
- Content type: Research
- Open Access
- Published: 02 January 2014
- Article: R13
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PIPE-CLIP: a comprehensive online tool for CLIP-seq data analysis
Authors (first, second and last of 5)
- Beibei Chen
- Jonghyun Yun
- Yang Xie
- Content type: Software
- Open Access
- Published: 22 January 2014
- Article: R18
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CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data
Authors (first, second and last of 6)
- Tsukasa Fukunaga
- Haruka Ozaki
- Hisanori Kiryu
- Content type: Method
- Open Access
- Published: 21 January 2014
- Article: R16
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The RNA-binding protein hnRNPLL induces a T cell alternative splicing program delineated by differential intron retention in polyadenylated RNA
Authors (first, second and last of 9)
- Vicky Cho
- Yan Mei
- T Daniel Andrews
- Content type: Research
- Open Access
- Published: 29 January 2014
- Article: R26
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GraphProt: modeling binding preferences of RNA-binding proteins
Authors (first, second and last of 4)
- Daniel Maticzka
- Sita J Lange
- Rolf Backofen
- Content type: Method
- Open Access
- Published: 22 January 2014
- Article: R17
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RNAmotifs: prediction of multivalent RNA motifs that control alternative splicing
Authors (first, second and last of 7)
- Matteo Cereda
- Uberto Pozzoli
- Jernej Ule
- Content type: Method
- Open Access
- Published: 31 January 2014
- Article: R20
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Global target mRNA specification and regulation by the RNA-binding protein ZFP36
Authors (first, second and last of 8)
- Neelanjan Mukherjee
- Nicholas C Jacobs
- Uwe Ohler
- Content type: Research
- Open Access
- Published: 08 January 2014
- Article: R12
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RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome
Authors (first, second and last of 7)
- Ian M Silverman
- Fan Li
- Brian D Gregory
- Content type: Method
- Open Access
- Published: 07 January 2014
- Article: R3
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Identification of distinct miRNA target regulation between breast cancer molecular subtypes using AGO2-PAR-CLIP and patient datasets
Authors (first, second and last of 8)
- Thalia A Farazi
- Jelle J ten Hoeve
- Lodewyk FA Wessels
- Content type: Research
- Open Access
- Published: 07 January 2014
- Article: R9
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Genome-wide analysis of light-regulated alternative splicing mediated by photoreceptors in Physcomitrella patens
Authors (first, second and last of 7)
- Hshin-Ping Wu
- Yi-shin Su
- Shih-Long Tu
- Content type: Research
- Open Access
- Published: 07 January 2014
- Article: R10
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dCLIP: a computational approach for comparative CLIP-seq analyses
Authors
- Tao Wang
- Yang Xie
- Guanghua Xiao
- Content type: Software
- Open Access
- Published: 07 January 2014
- Article: R11
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Dissecting the expression landscape of RNA-binding proteins in human cancers
Authors
- Bobak Kechavarzi
- Sarath Chandra Janga
- Content type: Research
- Open Access
- Published: 10 January 2014
- Article: R14
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Differential protein occupancy profiling of the mRNA transcriptome
Authors (first, second and last of 8)
- Markus Schueler
- Mathias Munschauer
- Christoph Dieterich
- Content type: Research
- Open Access
- Published: 13 January 2014
- Article: R15
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MutPred Splice: machine learning-based prediction of exonic variants that disrupt splicing
Authors (first, second and last of 8)
- Matthew Mort
- Timothy Sterne-Weiler
- Sean D Mooney
- Content type: Software
- Open Access
- Published: 13 January 2014
- Article: R19
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Mammalian conserved ADAR targets comprise only a small fragment of the human editosome
Authors
- Yishay Pinto
- Haim Y Cohen
- Erez Y Levanon
- Content type: Research
- Open Access
- Published: 07 January 2014
- Article: R5