Volume 13, issue 12, December 2012

20 articles in this issue

Personal genomes and precision medicine

Authors
- Gareth Highnam
- David Mittelman
- Content type: Meeting report
- Published: 19 December 2012
- Article: 324
The ADAR protein family

Authors
- Yiannis A Savva
- Leila E Rieder
- Robert A Reenan
- Content type: Protein family review
- Published: 28 December 2012
- Article: 252
A new era of human population genetics

Authors
- Alexander Platt
- John Novembre
- Content type: Research highlight
- Published: 26 December 2012
- Article: 182
Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone

Authors
- Todd J Treangen
- Adam M Phillippy
- Content type: Research highlight
- Published: 27 December 2012
- Article: 181
How to be wrong but useful

Authors
- Adam Kucharski
- Content type: Comment
- Published: 26 December 2012
- Article: 180
Assessing telomeric DNA content in pediatric cancers using whole-genome sequencing data

Authors (first, second and last of 19)
- Matthew Parker
- Xiang Chen
- Pediatric Cancer Genome Project
- Content type: Research
- Open Access
- Published: 11 December 2012
- Article: R113
A network module-based method for identifying cancer prognostic signatures

Authors
- Guanming Wu
- Lincoln Stein
- Content type: Method
- Open Access
- Published: 10 December 2012
- Article: R112
Whole-genome reconstruction and mutational signatures in gastric cancer

Authors (first, second and last of 38)
- Niranjan Nagarajan
- Denis Bertrand
- Yijun Ruan
- Content type: Research
- Open Access
- Published: 13 December 2012
- Article: R115
Natural variation of H3K27me3 distribution between two Arabidopsis accessions and its association with flanking transposable elements

Authors (first, second and last of 7)
- Xue Dong
- Julia Reimer
- Franziska Turck
- Content type: Research
- Open Access
- Published: 19 December 2012
- Article: R117
DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer

Authors (first, second and last of 10)
- Ali Bashashati
- Gholamreza Haffari
- Sohrab P Shah
- Content type: Method
- Open Access
- Published: 22 December 2012
- Article: R124
Widespread promoter-mediated coordination of transcription and mRNA degradation

Authors (first, second and last of 5)
- Mally Dori-Bachash
- Ophir Shalem
- Itay Tirosh
- Content type: Research
- Open Access
- Published: 13 December 2012
- Article: R114
FOCAL: an experimental design tool for systematizing metabolic discoveries and model development

Authors
- Christopher J Tervo
- Jennifer L Reed
- Content type: Method
- Open Access
- Published: 13 December 2012
- Article: R116
cnvHiTSeq: integrative models for high-resolution copy number variation detection and genotyping using population sequencing data

Authors
- Evangelos Bellos
- Michael R Johnson
- Lachlan J M Coin
- Content type: Method
- Open Access
- Published: 22 December 2012
- Article: R120
Ray Meta: scalable de novo metagenome assembly and profiling

Authors (first, second and last of 5)
- Sébastien Boisvert
- Frédéric Raymond
- Jacques Corbeil
- Content type: Method
- Open Access
- Published: 22 December 2012
- Article: R122
Microevolutionary analysis of Clostridium difficile genomes to investigate transmission

Authors (first, second and last of 20)
- Xavier Didelot
- David W Eyre
- Rosalind M Harding
- Content type: Research
- Open Access
- Published: 21 December 2012
- Article: R118
Mutation spectrum of Drosophila CNVs revealed by breakpoint sequencing

Authors
- Margarida Cardoso-Moreira
- J Roman Arguello
- Andrew G Clark
- Content type: Research
- Open Access
- Published: 22 December 2012
- Article: R119
A microRNA network regulates proliferative timing and extracellular matrix synthesis during cellular quiescence in fibroblasts

Authors (first, second and last of 10)
- Eric J Suh
- Matthew Y Remillard
- Hilary A Coller
- Content type: Research
- Open Access
- Published: 22 December 2012
- Article: R121
Differential analysis of high-throughput quantitative genetic interaction data

Authors
- Gordon J Bean
- Trey Ideker
- Content type: Method
- Open Access
- Published: 26 December 2012
- Article: R123
RIDDLE: reflective diffusion and local extension reveal functional associations for unannotated gene sets via proximity in a gene network

Authors (first, second and last of 6)
- Peggy I Wang
- Sohyun Hwang
- Edward M Marcotte
- Content type: Method
- Open Access
- Published: 26 December 2012
- Article: R125
Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus

Authors (first, second and last of 12)
- Santiago Castillo-Ramírez
- Jukka Corander
- Edward J Feil
- Content type: Research
- Open Access
- Published: 27 December 2012
- Article: R126

Volume 13, issue 12, December 2012

Personal genomes and precision medicine

The ADAR protein family

A new era of human population genetics

Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone

How to be wrong but useful

Assessing telomeric DNA content in pediatric cancers using whole-genome sequencing data

A network module-based method for identifying cancer prognostic signatures

Whole-genome reconstruction and mutational signatures in gastric cancer

Natural variation of H3K27me3 distribution between two Arabidopsis accessions and its association with flanking transposable elements

DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer

Widespread promoter-mediated coordination of transcription and mRNA degradation

FOCAL: an experimental design tool for systematizing metabolic discoveries and model development

cnvHiTSeq: integrative models for high-resolution copy number variation detection and genotyping using population sequencing data

Ray Meta: scalable de novo metagenome assembly and profiling

Microevolutionary analysis of Clostridium difficile genomes to investigate transmission

Mutation spectrum of Drosophila CNVs revealed by breakpoint sequencing

A microRNA network regulates proliferative timing and extracellular matrix synthesis during cellular quiescence in fibroblasts

Differential analysis of high-throughput quantitative genetic interaction data

RIDDLE: reflective diffusion and local extension reveal functional associations for unannotated gene sets via proximity in a gene network

Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus

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