Volume 8, supplement issue 1, June 2014
Genetic Analysis Workshop 18
- Issue editors
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- H Bickeböller
- JN Bailey
- J Beyene
- RM Cantor
- HJ Cordell
- RC Culverhouse
- CD Engelman
- DW Fardo
- S Ghosh
- IR König
- J Lorenzo Bermejo
- PE Melton
- SA Santorico
- GA Satten
- L Sun
- NL Tintle
- A Ziegler
- JW MacCluer
- L Almasy
112 articles in this issue
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Data for Genetic Analysis Workshop 18: human whole genome sequence, blood pressure, and simulated phenotypes in extended pedigrees
Authors (first, second and last of 18)
- Laura Almasy
- Thomas D Dyer
- The T2D-GENES Consortium
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S2
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Admixture mapping analysis in the context of GWAS with GAW18 data
Authors (first, second and last of 6)
- Mengjie Chen
- Can Yang
- Hongyu Zhao
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S3
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Identifying cryptic population structure in multigenerational pedigrees in a Mexican American sample
Authors
- Robert C Culverhouse
- Anthony L Hinrichs
- Brian K Suarez
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S4
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Estimating and adjusting for ancestry admixture in statistical methods for relatedness inference, heritability estimation, and association testing
Authors (first, second and last of 8)
- Timothy Thornton
- Matthew P Conomos
- Ellen M Wijsman
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S5
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Use of admixture and association for detection of quantitative trait loci in the Type 2 Diabetes Genetic Exploration by Next-Generation Sequencing in Ethnic Samples (T2D-GENES) study
Authors
- Daniel Yorgov
- Karen L Edwards
- Stephanie A Santorico
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S6
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Considering interactive effects in the identification of influential regions with extremely rare variants via fixed bin approach
Authors (first, second and last of 6)
- Michael Agne
- Chien-Hsun Huang
- Shaw-Hwa Lo
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S7
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A comparison of two collapsing methods in different approaches
Authors (first, second and last of 4)
- Carmen Dering
- Arne Schillert
- Andreas Ziegler
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S8
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Evaluation of gene-based association tests for analyzing rare variants using Genetic Analysis Workshop 18 data
Authors (first, second and last of 5)
- Andriy Derkach
- Jerry F Lawless
- Lei Sun
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S9
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Rare variant analysis of blood pressure phenotypes in the Genetic Analysis Workshop 18 whole genome sequencing data using sequence kernel association test
Authors
- Cates Mallaney
- Yun Ju Sung
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S10
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Genetic Analysis Workshop 18 single-nucleotide variant prioritization based on protein impact, sequence conservation, and gene annotation
Authors (first, second and last of 4)
- Thomas Nalpathamkalam
- Andriy Derkach
- Daniele Merico
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S11
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Whole genome sequence analysis of the simulated systolic blood pressure in Genetic Analysis Workshop 18 family data: long-term average and collapsing methods
Authors
- Yun Ju Sung
- Jacob Basson
- Dabeeru C Rao
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S12
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Small sample properties of rare variant analysis methods
Authors (first, second and last of 6)
- Michael D Swartz
- Taebeom Kim
- Iuliana Ionita-Laza
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S13
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Higher criticism approach to detect rare variants using whole genome sequencing data
Authors
- Jing Xuan
- Li Yang
- Zheyang Wu
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S14
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Analysis of homozygosity disequilibrium using whole-genome sequencing data
Authors
- Hsin-Chou Yang
- Han-Wei Li
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S15
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Imputation in families using a heuristic phasing approach
Authors
- August N Blackburn
- Angela K Dean
- Donna M Lehman
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S16
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Genotypic discrepancies arising from imputation
Authors
- Anthony L Hinrichs
- Robert C Culverhouse
- Brian K Suarez
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S17
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Family-based association test using normal approximation to gene dropping null distribution
Authors (first, second and last of 5)
- Yuan Jiang
- Sarah Emerson
- Yanming Di
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S18
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Identity-by-descent graphs offer a flexible framework for imputation and both linkage and association analyses
Authors (first, second and last of 8)
- Elizabeth Marchani Blue
- Charles YK Cheung
- Ellen M Wijsman
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S19
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Joint analysis of sequence data and single-nucleotide polymorphism data using pedigree information for imputation and recombination inference
Authors (first, second and last of 4)
- Sunah Song
- Robert Shields
- Jing Li
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S20
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Using Mendelian inheritance errors as quality control criteria in whole genome sequencing data set
Authors (first, second and last of 10)
- Valentina V Pilipenko
- Hua He
- Lisa J Martin
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S21
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Evaluating the concordance between sequencing, imputation and microarray genotype calls in the GAW18 data
Authors
- Ally Rogers
- Andrew Beck
- Nathan L Tintle
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S22
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PREST-plus identifies pedigree errors and cryptic relatedness in the GAW18 sample using genome-wide SNP data
Authors
- Lei Sun
- Apostolos Dimitromanolakis
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S23
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De novo mutations discovered in 8 Mexican American families through whole genome sequencing
Authors
- Heming Wang
- Xiaofeng Zhu
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S24
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A 2-step penalized regression method for family-based next-generation sequencing association studies
Authors (first, second and last of 5)
- Xiuhua Ding
- Shaoyong Su
- David W Fardo
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S25
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On family-based genome-wide association studies with large pedigrees: observations and recommendations
Authors (first, second and last of 11)
- David W Fardo
- Xue Zhang
- Lisa Martin
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S26
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Comparing the power of family-based association tests for sequence data with applications in the GAW18 simulated data
Authors (first, second and last of 4)
- Jing Huang
- Yong Chen
- Iuliana Ionita-Laza
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S27
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A generalized least-squares framework for rare-variant analysis in family data
Authors
- Dalin Li
- Jerome I Rotter,
- Xiuqing Guo
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S28
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Combined linkage and family-based association analysis improves candidate gene detection in Genetic Analysis Workshop 18 simulation data
Authors (first, second and last of 5)
- Yi Li
- Jia Nee Foo
- Jianjun Liu
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S29
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Comparison of multilevel modeling and the family-based association test for identifying genetic variants associated with systolic and diastolic blood pressure using Genetic Analysis Workshop 18 simulated data
Authors
- Jian Wang
- Robert Yu
- Sanjay Shete
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S30
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Family-based tests applied to extended pedigrees identify rare variants related to hypertension
Authors (first, second and last of 5)
- Mengyuan Xu
- Harold Z Wang
- Yin Y Shugart
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S31
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Two-stage family-based designs for sequencing studies
Authors
- Zhao Yang
- Duncan C Thomas
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S32
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A comparative analysis of family-based and population-based association tests using whole genome sequence data
Authors (first, second and last of 6)
- Jin J Zhou
- Wai-Ki Yip
- Nan M Laird
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S33
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Combining information from linkage and association mapping for next-generation sequencing longitudinal family data
Authors (first, second and last of 6)
- Brunilda Balliu
- Hae-Won Uh
- Jeanine J Houwing-Duistermaat
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S34
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Rare genetic variant analysis on blood pressure in related samples
Authors (first, second and last of 9)
- Han Chen
- Seung Hoan Choi
- Josée Dupuis
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S35
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Evaluation of the power and type I error of recently proposed family-based tests of association for rare variants
Authors (first, second and last of 6)
- Allison Hainline
- Carolina Alvarez
- Nathan L Tintle
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S36
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Family-based Bayesian collapsing method for rare-variant association study
Authors
- Liang He
- Janne M Pitkäniemi
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S37
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A comparison of whole genome sequencing with exome sequencing for family-based association studies
Authors
- Sean Lacey
- Jae Yoon Chung
- Honghuang Lin
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S38
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Adjustment of familial relatedness in association test for rare variants
Authors (first, second and last of 6)
- Cong Li
- Can Yang
- Hongyu Zhao
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S39
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Extended T2 tests for longitudinal family data in whole genome sequencing studies
Authors
- Yiwei Liu
- Jing Xuan
- Zheyang Wu
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S40
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Kernel score statistic for dependent data
Authors (first, second and last of 4)
- Dörthe Malzahn
- Stefanie Friedrichs
- Heike Bickeböller
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S41
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Adjusting for population stratification and relatedness with sequencing data
Authors
- Yiwei Zhang
- Wei Pan
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S42
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Analysis of Genetic Analysis Workshop 18 data with gene-based penalized regression
Authors
- Kristin L Ayers
- Heather J Cordell
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S43
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Whole genome sequencing data from pedigrees suggests linkage disequilibrium among rare variants created by population admixture
Authors
- Tao Feng
- Xiaofeng Zhu
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S44
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A Bayesian hierarchical gene model on latent genotypes for genome-wide association studies
Authors
- Ian Johnston
- Luis E Carvalho
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S45
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Gene-based analysis of rare and common variants to determine association with blood pressure
Authors
- Xiaofeng Liu
- Joseph Beyene
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S46
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A dual-clustering framework for association screening with whole genome sequencing data and longitudinal traits
Authors (first, second and last of 5)
- Ying Liu
- ChienHsun Huang
- Tian Zheng
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S47
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Comparison of several sequence-based association methods in pedigrees
Authors
- George Mathew
- Varghese George
- Hongyan Xu
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S48
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A variance component-based gene burden test
Authors (first, second and last of 4)
- Juan M Peralta
- Marcio Almeida
- John Blangero
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S49
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Collapsing singletons may boost signal for associating rare variants in sequencing study
Authors
- Wei Wang
- Zhi Wei
- Content type: Proceedings
- Open Access
- Published: 17 June 2014
- Article: S50