Volume 9, issue 1, December 2009
76 articles in this issue
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Context dependent reference states of solvent accessibility derived from native protein structures and assessed by predictability analysis
Authors
- Hemajit Singh
- Shandar Ahmad
- Content type: Research article
- Open Access
- Published: 27 April 2009
- Article: 25
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Small local variations in B-form DNA lead to a large variety of global geometries which can accommodate most DNA-binding protein motifs
Authors
- Arvind Marathe
- Deepti Karandur
- Manju Bansal
- Content type: Research article
- Open Access
- Published: 24 April 2009
- Article: 24
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Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis
Authors
- Gergely Csaba
- Fabian Birzele
- Ralf Zimmer
- Content type: Methodology article
- Open Access
- Published: 17 April 2009
- Article: 23
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Analysis of the impact of solvent on contacts prediction in proteins
Authors (first, second and last of 4)
- Sergey A Samsonov
- Joan Teyra
- M Teresa Pisabarro
- Content type: Research article
- Open Access
- Published: 15 April 2009
- Article: 22
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Characterization of conserved properties of hemagglutinin of H5N1 and human influenza viruses: possible consequences for therapy and infection control
Authors (first, second and last of 7)
- Veljko Veljkovic
- Nevena Veljkovic
- Heinz Köhler
- Content type: Research article
- Open Access
- Published: 07 April 2009
- Article: 21
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Relationship between chemical shift value and accessible surface area for all amino acid atoms
Authors
- Wim F Vranken
- Wolfgang Rieping
- Content type: Research article
- Open Access
- Published: 02 April 2009
- Article: 20
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ProteinShader: illustrative rendering of macromolecules
Authors
- Joseph R Weber
- Content type: Software
- Open Access
- Published: 30 March 2009
- Article: 19
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Error analysis in the determination of the electron microscopical contrast transfer function parameters from experimental power Spectra
Authors (first, second and last of 4)
- Carlos Oscar S Sorzano
- Abraham Otero
- José MarÃa Carazo
- Content type: Methodology article
- Open Access
- Published: 26 March 2009
- Article: 18
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Solution structure of the parvulin-type PPIase domain of Staphylococcus aureus PrsA – Implications for the catalytic mechanism of parvulins
Authors (first, second and last of 7)
- Outi Heikkinen
- Raili Seppala
- Ilkka Kilpeläinen
- Content type: Research article
- Open Access
- Published: 24 March 2009
- Article: 17
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Rational mutagenesis to support structure-based drug design: MAPKAP kinase 2 as a case study
Authors (first, second and last of 18)
- Maria A Argiriadi
- Silvino Sousa
- Ramkrishna Sadhukhan
- Content type: Research article
- Open Access
- Published: 18 March 2009
- Article: 16
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Structural pattern matching of nonribosomal peptides
Authors (first, second and last of 5)
- Ségolène Caboche
- Maude Pupin
- Gregory Kucherov
- Content type: Methodology article
- Open Access
- Published: 18 March 2009
- Article: 15
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Implications of the structure of human uridine phosphorylase 1 on the development of novel inhibitors for improving the therapeutic window of fluoropyrimidine chemotherapy
Authors (first, second and last of 4)
- Tarmo P Roosild
- Samantha Castronovo
- Giuseppe Pizzorno
- Content type: Research article
- Open Access
- Published: 16 March 2009
- Article: 14
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Database of ligand-induced domain movements in enzymes
Authors
- Guoying Qi
- Steven Hayward
- Content type: Database
- Open Access
- Published: 06 March 2009
- Article: 13
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Improving consensus structure by eliminating averaging artifacts
Authors
- Dukka B KC
- Content type: Research article
- Open Access
- Published: 06 March 2009
- Article: 12
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The glycine brace: a component of Rab, Rho, and Ran GTPases associated with hinge regions of guanine- and phosphate-binding loops
Authors
- Andrew F Neuwald
- Content type: Research article
- Open Access
- Published: 05 March 2009
- Article: 11
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An automatic method for assessing structural importance of amino acid positions
Authors
- Michael I Sadowski
- David T Jones
- Content type: Research article
- Open Access
- Published: 04 March 2009
- Article: 10
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An unexpected phosphate binding site in Glyceraldehyde 3-Phosphate Dehydrogenase: Crystal structures of apo, holo and ternary complex of Cryptosporidium parvum enzyme
Authors
- William J Cook
- Olga Senkovich
- Debasish Chattopadhyay
- Content type: Research article
- Open Access
- Published: 25 February 2009
- Article: 9
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Functional correlation of bacterial LuxS with their quaternary associations: interface analysis of the structure networks
Authors
- Moitrayee Bhattacharyya
- Saraswathi Vishveshwara
- Content type: Research article
- Open Access
- Published: 25 February 2009
- Article: 8
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The structure of the leukemia drug imatinib bound to human quinone reductase 2 (NQO2)
Authors (first, second and last of 4)
- Jonathan A Winger
- Oliver Hantschel
- John Kuriyan
- Content type: Research article
- Open Access
- Published: 24 February 2009
- Article: 7
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Comparison of molecular dynamics and superfamily spaces of protein domain deformation
Authors (first, second and last of 6)
- Javier A Velázquez-Muriel
- Manuel Rueda
- José-MarÃa Carazo
- Content type: Research article
- Open Access
- Published: 17 February 2009
- Article: 6
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Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks
Authors (first, second and last of 6)
- Ian Walsh
- Davide Baù
- Gianluca Pollastri
- Content type: Research article
- Open Access
- Published: 30 January 2009
- Article: 5
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Analysing the origin of long-range interactions in proteins using lattice models
Authors
- Orly Noivirt-Brik
- Ron Unger
- Amnon Horovitz
- Content type: Research article
- Open Access
- Published: 29 January 2009
- Article: 4
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Molecular models of human P-glycoprotein in two different catalytic states
Authors (first, second and last of 5)
- Jean-Paul Becker
- Grégoire Depret
- Martine Prévost
- Content type: Research article
- Open Access
- Published: 22 January 2009
- Article: 3
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Atomic structures and functional implications of the archaeal RecQ-like helicase Hjm
Authors (first, second and last of 8)
- Takuji Oyama
- Hayato Oka
- Kosuke Morikawa
- Content type: Research article
- Open Access
- Published: 22 January 2009
- Article: 2
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Mesothelin, Stereocilin, and Otoancorin are predicted to have superhelical structures with ARM-type repeats
Authors (first, second and last of 5)
- Bangalore K Sathyanarayana
- Yoonsoo Hahn
- Byungkook Lee
- Content type: Research article
- Open Access
- Published: 07 January 2009
- Article: 1