Volume 8, issue 1, December 2008
134 articles in this issue
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The lipoxygenase gene family: a genomic fossil of shared polyploidy between Glycine max and Medicago truncatula
Authors (first, second and last of 8)
- Jin Hee Shin
- Kyujung Van
- Suk-Ha Lee
- Content type: Research article
- Open Access
- Published: 23 December 2008
- Article: 133
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Elicitor-induced transcription factors for metabolic reprogramming of secondary metabolism in Medicago truncatula
Authors
- Marina A Naoumkina
- XianZhi He
- Richard A Dixon
- Content type: Research article
- Open Access
- Published: 22 December 2008
- Article: 132
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Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process
Authors (first, second and last of 4)
- Marino Expósito-RodrÃguez
- Andrés A Borges
- José A Pérez
- Content type: Research article
- Open Access
- Published: 22 December 2008
- Article: 131
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A clarified position for solanum lycopersicum var. cerasiformein the evolutionary history of tomatoes (solanaceae)
Authors (first, second and last of 4)
- Nicolas Ranc
- Stéphane Muños
- Mathilde Causse
- Content type: Research article
- Open Access
- Published: 20 December 2008
- Article: 130
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Defence reactions in the apoplastic proteome of oilseed rape (Brassica napus var. napus) attenuate Verticillium longisporumgrowth but not disease symptoms
Authors (first, second and last of 6)
- Saskia Floerl
- Christine Druebert
- Andrea Polle
- Content type: Research article
- Open Access
- Published: 18 December 2008
- Article: 129
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A SNP transferability survey within the genus Vitis
Authors (first, second and last of 9)
- Silvia Vezzulli
- Diego Micheletti
- Riccardo Velasco
- Content type: Research article
- Open Access
- Published: 16 December 2008
- Article: 128
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A set of microsatellite markers with long core repeat optimized for grape (Vitisspp.) genotyping
Authors (first, second and last of 6)
- Guido Cipriani
- Maria Teresa Marrazzo
- Raffaele Testolin
- Content type: Research article
- Open Access
- Published: 16 December 2008
- Article: 127
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The effects of nitrogen and potassium nutrition on the growth of nonembryogenic and embryogenic tissue of sweet orange (Citrus sinensis(L.) Osbeck)
Authors
- Randall P Niedz
- Terence J Evens
- Content type: Research article
- Open Access
- Published: 16 December 2008
- Article: 126
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ESKIMO1 is a key gene involved in water economy as well as cold acclimation and salt tolerance
Authors (first, second and last of 11)
- Oumaya Bouchabke-Coussa
- Marie-Luce Quashie
- Mylène Durand-Tardif
- Content type: Research article
- Open Access
- Published: 07 December 2008
- Article: 125
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A putative autonomous 20.5 kb-CACTA transposon insertion in an F3'H allele identifies a new CACTA transposon subfamily in Glycine max
Authors
- Gracia Zabala
- Lila Vodkin
- Content type: Research article
- Open Access
- Published: 02 December 2008
- Article: 124
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Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice
Authors (first, second and last of 16)
- Séverine Lacombe
- Hiroshi Nagasaki
- Manuel Echeverria
- Content type: Research article
- Open Access
- Published: 02 December 2008
- Article: 123
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Transcript profiles uncover temporal and stress-induced changes of metabolic pathways in germinating sugar beet seeds
Authors (first, second and last of 6)
- Elena Pestsova
- Juliane Meinhard
- Peter Westhoff
- Content type: Research article
- Open Access
- Published: 01 December 2008
- Article: 122
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The MYST histone acetyltransferases are essential for gametophyte development in Arabidopsis
Authors (first, second and last of 7)
- David Latrasse
- Moussa Benhamed
- Marianne Delarue
- Content type: Research article
- Open Access
- Published: 28 November 2008
- Article: 121
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Arabidopsis At5g39790 encodes a chloroplast-localized, carbohydrate-binding, coiled-coil domain-containing putative scaffold protein
Authors (first, second and last of 7)
- Elke M Lohmeier-Vogel
- David Kerk
- Greg BG Moorhead
- Content type: Research article
- Open Access
- Published: 27 November 2008
- Article: 120
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Development and mapping of Simple Sequence Repeat markers for pearl millet from data mining of Expressed Sequence Tags
Authors (first, second and last of 7)
- S Senthilvel
- B Jayashree
- CT Hash
- Content type: Research article
- Open Access
- Published: 27 November 2008
- Article: 119
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RICD: A rice indicacDNA database resource for rice functional genomics
Authors (first, second and last of 9)
- Tingting Lu
- Xuehui Huang
- Bin Han
- Content type: Database
- Open Access
- Published: 26 November 2008
- Article: 118
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Morphological and molecular characterization of a spontaneously tuberizing potato mutant: an insight into the regulatory mechanisms of tuber induction
Authors (first, second and last of 4)
- Lukas Fischer
- Helena Lipavska
- Zdenek Opatrny
- Content type: Research article
- Open Access
- Published: 21 November 2008
- Article: 117
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Assessment of allelic diversity in intron-containing Mal d 1 genes and their association to apple allergenicity
Authors (first, second and last of 9)
- Zhongshan Gao
- Eric W van de Weg
- Luud JWJ Gilissen
- Content type: Research article
- Open Access
- Published: 13 November 2008
- Article: 116
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Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila
Authors (first, second and last of 13)
- Teruaki Taji
- Tetsuya Sakurai
- Kazuo Shinozaki
- Content type: Research article
- Open Access
- Published: 12 November 2008
- Article: 115
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Transcriptomic profiling of mature embryo from an elite super-hybrid rice LYP9 and its parental lines
Authors (first, second and last of 6)
- Xiaomeng Ge
- Weihua Chen
- Jun Yu
- Content type: Research article
- Open Access
- Published: 11 November 2008
- Article: 114
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Systemic resistance and lipoxygenase-related defence response induced in tomato by Pseudomonas putidastrain BTP1
Authors (first, second and last of 5)
- Adam Akram
- Marc Ongena
- Philippe Thonart
- Content type: Research article
- Open Access
- Published: 10 November 2008
- Article: 113
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Exploring valid reference genes for gene expression studies in Brachypodium distachyonby real-time PCR
Authors (first, second and last of 5)
- Shin-Young Hong
- Pil Joon Seo
- Chung-Mo Park
- Content type: Research article
- Open Access
- Published: 07 November 2008
- Article: 112
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Molecular population genetics and gene expression analysis of duplicated CBF genes of Arabidopsis thaliana
Authors (first, second and last of 7)
- Yen-Heng Lin
- Shih-Ying Hwang
- Tsan-Piao Lin
- Content type: Research article
- Open Access
- Published: 07 November 2008
- Article: 111
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Genome-wide transcriptional analysis of super-embryogenic Medicago truncatulaexplant cultures
Authors (first, second and last of 4)
- Nijat Imin
- Nicolas Goffard
- Barry G Rolfe
- Content type: Research article
- Open Access
- Published: 27 October 2008
- Article: 110
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Host-plant-mediated effects of Nadefensin on herbivore and pathogen resistance in Nicotiana attenuata
Authors
- Cbgowda Rayapuram
- Ian T Baldwin
- Content type: Research article
- Open Access
- Published: 25 October 2008
- Article: 109
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RACK1 genes regulate plant development with unequal genetic redundancy in Arabidopsis
Authors
- Jianjun Guo
- Jin-Gui Chen
- Content type: Research article
- Open Access
- Published: 23 October 2008
- Article: 108
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A novel screening protocol for the isolation of hydrogen producing Chlamydomonas reinhardtiistrains
Authors (first, second and last of 4)
- Thilo Rühle
- Anja Hemschemeier
- Thomas Happe
- Content type: Research article
- Open Access
- Published: 17 October 2008
- Article: 107
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Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinumL.)
Authors (first, second and last of 8)
- Hari D Upadhyaya
- Sangam L Dwivedi
- Sube Singh
- Content type: Research article
- Open Access
- Published: 16 October 2008
- Article: 106
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Natural variation in CBF gene sequence, gene expression and freezing tolerance in the Versailles core collection of Arabidopsis thaliana
Authors (first, second and last of 9)
- Heather I McKhann
- Carine Gery
- Evelyne Téoulé
- Content type: Research article
- Open Access
- Published: 15 October 2008
- Article: 105
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Identification, cloning and characterization of sis7 and sis10 sugar-insensitive mutants of Arabidopsis
Authors (first, second and last of 4)
- Yadong Huang
- Chun Yao Li
- Susan I Gibson
- Content type: Research article
- Open Access
- Published: 14 October 2008
- Article: 104
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Applying genotyping (TILLING) and phenotyping analyses to elucidate gene function in a chemically induced sorghum mutant population
Authors (first, second and last of 7)
- Zhanguo Xin
- Ming Li Wang
- John Burke
- Content type: Methodology article
- Open Access
- Published: 14 October 2008
- Article: 103
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Transgenic rice expressing Allium sativumleaf agglutinin (ASAL) exhibits high-level resistance against major sap-sucking pests
Authors (first, second and last of 5)
- Bharathi Yarasi
- Vijayakumar Sadumpati
- Venkateswara Rao Khareedu
- Content type: Research article
- Open Access
- Published: 14 October 2008
- Article: 102
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Pepper EST database: comprehensive in silico tool for analyzing the chili pepper (Capsicum annuum) transcriptome
Authors (first, second and last of 9)
- Hyun-Jin Kim
- Kwang-Hyun Baek
- Cheol-Goo Hur
- Content type: Database
- Open Access
- Published: 09 October 2008
- Article: 101
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RNAi-directed downregulation of OsBADH2 results in aroma (2-acetyl-1-pyrroline) production in rice (Oryza sativa L.)
Authors (first, second and last of 13)
- Xiangli Niu
- Wei Tang
- Yongsheng Liu
- Content type: Research article
- Open Access
- Published: 08 October 2008
- Article: 100
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Regulon organization of Arabidopsis
Authors
- Wieslawa I Mentzen
- Eve Syrkin Wurtele
- Content type: Research article
- Open Access
- Published: 30 September 2008
- Article: 99
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Cloning, characterisation and comparative analysis of a starch synthase IV gene in wheat: functional and evolutionary implications
Authors (first, second and last of 4)
- Marina Leterrier
- Lynn D Holappa
- Diane M Beckles
- Content type: Research article
- Open Access
- Published: 30 September 2008
- Article: 98
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Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense
Authors (first, second and last of 6)
- Almudena Castillo
- Hikmet Budak
- Pilar Hernandez
- Content type: Research article
- Open Access
- Published: 28 September 2008
- Article: 97
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Overlapping functions of the starch synthases SSII and SSIII in amylopectin biosynthesis in Arabidopsis
Authors (first, second and last of 6)
- Xiaoli Zhang
- Nicolas Szydlowski
- Alan M Myers
- Content type: Research article
- Open Access
- Published: 23 September 2008
- Article: 96
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A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R
Authors (first, second and last of 12)
- Jan Bartoš
- Etienne Paux
- Jaroslav Doležel
- Content type: Research article
- Open Access
- Published: 19 September 2008
- Article: 95
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A new picture of cell wall protein dynamics in elongating cells of Arabidopsis thaliana: Confirmed actors and newcomers
Authors (first, second and last of 5)
- Muhammad Irshad
- Hervé Canut
- Elisabeth Jamet
- Content type: Research article
- Open Access
- Published: 16 September 2008
- Article: 94
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Small RNA regulation of ovule development in the cotton plant, G. hirsutumL
Authors (first, second and last of 10)
- Ibrokhim Y Abdurakhmonov
- Eric J Devor
- Abdusattor Abdukarimov
- Content type: Research article
- Open Access
- Published: 16 September 2008
- Article: 93
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Natural variation in DNA methylation in ribosomal RNA genes of Arabidopsis thaliana
Authors
- Hye Ryun Woo
- Eric J Richards
- Content type: Research article
- Open Access
- Published: 10 September 2008
- Article: 92
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Transcriptional profiling of pea ABR17 mediated changes in gene expression in Arabidopsis thaliana
Authors (first, second and last of 6)
- Sowmya S Krishnaswamy
- Sanjeeva Srivastava
- Nat NV Kav
- Content type: Research article
- Open Access
- Published: 10 September 2008
- Article: 91
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Survey of extrachromosomal circular DNA derived from plant satellite repeats
Authors
- Alice Navrátilová
- Andrea KoblÞková
- Jiřà Macas
- Content type: Research article
- Open Access
- Published: 22 August 2008
- Article: 90
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Physiological and molecular characterization of aluminum resistance in Medicago truncatula
Authors (first, second and last of 5)
- Divya Chandran
- Natasha Sharopova
- Deborah A Samac
- Content type: Research article
- Open Access
- Published: 19 August 2008
- Article: 89
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Relationship between homoeologous regulatory and structural genes in allopolyploid genome – A case study in bread wheat
Authors
- Elena K Khlestkina
- Marion S Röder
- Elena A Salina
- Content type: Research article
- Open Access
- Published: 13 August 2008
- Article: 88
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Transcriptional responses of Arabidopsis thaliana plants to As (V) stress
Authors (first, second and last of 7)
- Jason M Abercrombie
- Matthew D Halfhill
- C Neal Stewart Jr
- Content type: Research article
- Open Access
- Published: 06 August 2008
- Article: 87
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The plant Apolipoprotein D ortholog protects Arabidopsis against oxidative stress
Authors (first, second and last of 4)
- Jean-Benoit F Charron
- Francois Ouellet
- Fathey Sarhan
- Content type: Research article
- Open Access
- Published: 31 July 2008
- Article: 86
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Plant-like substitutions in the large-subunit carboxy terminus of Chlamydomonas Rubisco increase CO2/O2 Specificity
Authors
- Sriram Satagopan
- Robert J Spreitzer
- Content type: Research article
- Open Access
- Published: 30 July 2008
- Article: 85