Volume 8, issue 1, December 2007
481 articles in this issue
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Gene expression profiling of aging reveals activation of a p53-mediated transcriptional program
Authors (first, second and last of 6)
- Michael G Edwards
- Rozalyn M Anderson
- Tomas A Prolla
- Content type: Research article
- Open Access
- Published: 23 March 2007
- Article: 80
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Zebrafish orthologs of human muscular dystrophy genes
Authors (first, second and last of 8)
- Leta S Steffen
- Jeffrey R Guyon
- Louis M Kunkel
- Content type: Research article
- Open Access
- Published: 20 March 2007
- Article: 79
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Predicting protein function by machine learning on amino acid sequences – a critical evaluation
Authors
- Ali Al-Shahib
- Rainer Breitling
- David R Gilbert
- Content type: Research article
- Open Access
- Published: 20 March 2007
- Article: 78
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Allelotyping of pooled DNA with 250 K SNP microarrays
Authors (first, second and last of 7)
- Stefan Wilkening
- Bowang Chen
- Federico Canzian
- Content type: Methodology article
- Open Access
- Published: 16 March 2007
- Article: 77
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Transcriptional profiling of C57 and DBA strains of mice in the absence and presence of morphine
Authors (first, second and last of 8)
- Dorothy E Grice
- Ilkka Reenilä
- Wade H Berrettini
- Content type: Research article
- Open Access
- Published: 16 March 2007
- Article: 76
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Expansion of the Bactericidal/Permeability Increasing-like (BPI-like) protein locus in cattle
Authors (first, second and last of 6)
- Thomas T Wheeler
- Kylie A Hood
- Shaying Zhao
- Content type: Research article
- Open Access
- Published: 15 March 2007
- Article: 75
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The human PINK1 locus is regulated in vivo by a non-coding natural antisense RNA during modulation of mitochondrial function
Authors (first, second and last of 9)
- Camilla Scheele
- Natasa Petrovic
- James A Timmons
- Content type: Research article
- Open Access
- Published: 15 March 2007
- Article: 74
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Diagnostic and prognostic gene expression signatures in 177 soft tissue sarcomas: hypoxia-induced transcription profile signifies metastatic potential
Authors (first, second and last of 13)
- Princy Francis
- Heidi Maria Namløs
- Mef Nilbert
- Content type: Research article
- Open Access
- Published: 14 March 2007
- Article: 73
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Transcriptional profiling of Actinobacillus pleuropneumoniae under iron-restricted conditions
Authors (first, second and last of 5)
- Vincent Deslandes
- John HE Nash
- Mario Jacques
- Content type: Research article
- Open Access
- Published: 13 March 2007
- Article: 72
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Signal transduction-related responses to phytohormones and environmental challenges in sugarcane
Authors (first, second and last of 20)
- Flávia R Rocha
- Flávia S Papini-Terzi
- Gláucia M Souza
- Content type: Research article
- Open Access
- Published: 13 March 2007
- Article: 71
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Gene expression profiling of human mesenchymal stem cells derived from bone marrow during expansion and osteoblast differentiation
Authors (first, second and last of 10)
- Birgit Kulterer
- Gerald Friedl
- Zlatko Trajanoski
- Content type: Research article
- Open Access
- Published: 12 March 2007
- Article: 70
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Genetical genomics: use all data
Authors
- Miguel Pérez-Enciso
- José R Quevedo
- Antonio Bahamonde
- Content type: Research article
- Open Access
- Published: 12 March 2007
- Article: 69
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Geography and genography: prediction of continental origin using randomly selected single nucleotide polymorphisms
Authors (first, second and last of 5)
- Dominic J Allocco
- Qing Song
- Isaac S Kohane
- Content type: Research article
- Open Access
- Published: 10 March 2007
- Article: 68
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Identification of plant promoter constituents by analysis of local distribution of short sequences
Authors (first, second and last of 9)
- Yoshiharu Y Yamamoto
- Hiroyuki Ichida
- Tomoko Abe
- Content type: Research article
- Open Access
- Published: 08 March 2007
- Article: 67
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A bootstrap based analysis pipeline for efficient classification of phylogenetically related animal miRNAs
Authors
- Yong Huang
- Xun Gu
- Content type: Methodology article
- Open Access
- Published: 06 March 2007
- Article: 66
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The molecular signature of therapeutic mesenchymal stem cells exposes the architecture of the hematopoietic stem cell niche synapse
Authors (first, second and last of 7)
- Enrico Pedemonte
- Federica Benvenuto
- Sergio E Baranzini
- Content type: Research article
- Open Access
- Published: 06 March 2007
- Article: 65
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Microarray analysis of human leucocyte subsets: the advantages of positive selection and rapid purification
Authors (first, second and last of 7)
- Paul A Lyons
- Maria Koukoulaki
- Kenneth GC Smith
- Content type: Research article
- Open Access
- Published: 05 March 2007
- Article: 64
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Target genes of myostatin loss-of-function in muscles of late bovine fetuses
Authors (first, second and last of 5)
- Isabelle Cassar-Malek
- Florent Passelaigue
- Jean-François Hocquette
- Content type: Research article
- Open Access
- Published: 01 March 2007
- Article: 63
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Gene expression profiles in asbestos-exposed epithelial and mesothelial lung cell lines
Authors (first, second and last of 10)
- Penny Nymark
- Pamela M Lindholm
- Sakari Knuutila
- Content type: Research article
- Open Access
- Published: 01 March 2007
- Article: 62
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Intercenter reliability and validity of the rhesus macaque GeneChip
Authors (first, second and last of 4)
- Fenghai Duan
- Eliot R Spindel
- Robert B Norgren Jr
- Content type: Research article
- Open Access
- Published: 28 February 2007
- Article: 61
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A phylogenomic analysis of the Actinomycetales mce operons
Authors
- Nicola Casali
- Lee W Riley
- Content type: Research article
- Open Access
- Published: 26 February 2007
- Article: 60
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Sequence features responsible for intron retention in human
Authors
- Noboru Jo Sakabe
- Sandro José de Souza
- Content type: Research article
- Open Access
- Published: 26 February 2007
- Article: 59
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Temporal dynamics of gene expression in the lung in a baboon model of E. coli sepsis
Authors (first, second and last of 7)
- Hua Zhu
- Yuhong Tang
- Florea Lupu
- Content type: Research article
- Open Access
- Published: 26 February 2007
- Article: 58
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Compared genomics of the strand switch region of Leishmania chromosome 1 reveal a novel genus-specific gene and conserved structural features and sequence motifs
Authors (first, second and last of 6)
- Jacques Puechberty
- Christine Blaineau
- Patrick Bastien
- Content type: Research article
- Open Access
- Published: 24 February 2007
- Article: 57
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Differential regulation of gene products in newly synthesized Brassica napus allotetraploids is not related to protein function nor subcellular localization
Authors (first, second and last of 8)
- Warren Albertin
- Karine Alix
- Hervé Thiellement
- Content type: Research article
- Open Access
- Published: 21 February 2007
- Article: 56
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Microarray-based analysis of fish egg quality after natural or controlled ovulation
Authors
- Emilie Bonnet
- Alexis Fostier
- Julien Bobe
- Content type: Research article
- Open Access
- Published: 21 February 2007
- Article: 55
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Comparative genomic analysis of regulation of anaerobic respiration in ten genomes from three families of gamma-proteobacteria (Enterobacteriaceae, Pasteurellaceae, Vibrionaceae)
Authors (first, second and last of 4)
- Dmitry A Ravcheev
- Anna V Gerasimova
- Mikhail S Gelfand
- Content type: Research article
- Open Access
- Published: 21 February 2007
- Article: 54
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Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer
Authors (first, second and last of 9)
- Judith N Kloth
- Jan Oosting
- Ekaterina S Jordanova
- Content type: Research article
- Open Access
- Published: 20 February 2007
- Article: 53
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Simple sequence repeats in zebra finch (Taeniopygia guttata) expressed sequence tags: a new resource for evolutionary genetic studies of passerines
Authors
- Jon Slate
- Matthew C Hale
- Timothy R Birkhead
- Content type: Research article
- Open Access
- Published: 14 February 2007
- Article: 52
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A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolution
Authors (first, second and last of 10)
- Jan O Andersson
- Åsa M Sjögren
- Andrew J Roger
- Content type: Research article
- Open Access
- Published: 14 February 2007
- Article: 51
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Analysis of a set of Australian northern brown bandicoot expressed sequence tags with comparison to the genome sequence of the South American grey short tailed opossum
Authors (first, second and last of 7)
- Michelle L Baker
- Sandra Indiviglio
- Anthony T Papenfuss
- Content type: Research article
- Open Access
- Published: 13 February 2007
- Article: 50
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A parallel genetic algorithm for single class pattern classification and its application for gene expression profiling in Streptomyces coelicolor
Authors
- Cuong C To
- Jiri Vohradsky
- Content type: Research article
- Open Access
- Published: 13 February 2007
- Article: 49
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Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli
Authors (first, second and last of 6)
- Shujiro Okuda
- Shuichi Kawashima
- Susumu Goto
- Content type: Research article
- Open Access
- Published: 13 February 2007
- Article: 48
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A BAC pooling strategy combined with PCR-based screenings in a large, highly repetitive genome enables integration of the maize genetic and physical maps
Authors (first, second and last of 13)
- Young-Sun Yim
- Patricia Moak
- Georgia L Davis
- Content type: Research article
- Open Access
- Published: 09 February 2007
- Article: 47
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"NeuroStem Chip": a novel highly specialized tool to study neural differentiation pathways in human stem cells
Authors (first, second and last of 5)
- Sergey V Anisimov
- Nicolaj S Christophersen
- Patrik Brundin
- Content type: Methodology article
- Open Access
- Published: 08 February 2007
- Article: 46
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Patterns of gene recombination shape var gene repertoires in Plasmodium falciparum: comparisons of geographically diverse isolates
Authors (first, second and last of 12)
- Susan M Kraemer
- Sue A Kyes
- Joseph D Smith
- Content type: Research article
- Open Access
- Published: 07 February 2007
- Article: 45
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A gene-based radiation hybrid map of the gilthead sea bream Sparus aurata refines and exploits conserved synteny with Tetraodon nigroviridis
Authors (first, second and last of 12)
- Elena Sarropoulou
- Rafaella Franch
- Robert Geisler
- Content type: Research article
- Open Access
- Published: 07 February 2007
- Article: 44
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Single nucleotide polymorphisms (SNPs) distinguish Indian-origin and Chinese-origin rhesus macaques (Macaca mulatta)
Authors (first, second and last of 10)
- Betsy Ferguson
- Summer L Street
- Robert B Norgren Jr
- Content type: Research article
- Open Access
- Published: 07 February 2007
- Article: 43
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Mapping of transcription start sites of human retina expressed genes
Authors
- Valeria Roni
- Ronald Carpio
- Bernd Wissinger
- Content type: Research article
- Open Access
- Published: 07 February 2007
- Article: 42
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Loss of Parp-1 affects gene expression profile in a genome-wide manner in ES cells and liver cells
Authors (first, second and last of 10)
- Hideki Ogino
- Tadashige Nozaki
- Mitsuko Masutani
- Content type: Research article
- Open Access
- Published: 07 February 2007
- Article: 41
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A first generation BAC-based physical map of the channel catfish genome
Authors
- Sylvie M-A Quiniou
- Geoffrey C Waldbieser
- Mary V Duke
- Content type: Research article
- Open Access
- Published: 06 February 2007
- Article: 40
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A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains
Authors (first, second and last of 6)
- John N Hutchinson
- Alexander W Ensminger
- Andrew Chess
- Content type: Research article
- Open Access
- Published: 01 February 2007
- Article: 39
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A distinct epigenetic signature at targets of a leukemia protein
Authors (first, second and last of 6)
- Stefano Rossetti
- André T Hoogeveen
- Nicoletta Sacchi
- Content type: Research article
- Open Access
- Published: 01 February 2007
- Article: 38
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Spatial and sex-specific dissection of the Anopheles gambiae midgut transcriptome
Authors (first, second and last of 5)
- Emma Warr
- Ruth Aguilar
- George Dimopoulos
- Content type: Research article
- Open Access
- Published: 29 January 2007
- Article: 37
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Transcription profiling of a recently colonised pyrethroid resistant Anopheles gambiae strain from Ghana
Authors
- Pie Müller
- Martin J Donnelly
- Hilary Ranson
- Content type: Research article
- Open Access
- Published: 29 January 2007
- Article: 36
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The small FNR regulon of Neisseria gonorrhoeae: comparison with the larger Escherichia coli FNR regulon and interaction with the NarQ-NarP regulon
Authors (first, second and last of 7)
- Rebekah N Whitehead
- Tim W Overton
- Nigel J Saunders
- Content type: Research article
- Open Access
- Published: 29 January 2007
- Article: 35
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Mapping a Quantitative Trait Locus (QTL) conferring pyrethroid resistance in the African malaria vector Anopheles funestus
Authors (first, second and last of 8)
- Charles S Wondji
- John Morgan
- Hilary Ranson
- Content type: Research article
- Open Access
- Published: 29 January 2007
- Article: 34
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TICdb: a collection of gene-mapped translocation breakpoints in cancer
Authors
- Francisco J Novo
- Iñigo Ortiz de MendÃbil
- José L Vizmanos
- Content type: Database
- Open Access
- Published: 26 January 2007
- Article: 33
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Novel expressed sequences identified in a model of androgen independent prostate cancer
Authors (first, second and last of 9)
- Steven N Quayle
- Heidi Hare
- Marianne D Sadar
- Content type: Research article
- Open Access
- Published: 26 January 2007
- Article: 32