Volume 8, issue 1, December 2007
481 articles in this issue
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Differential gene expression and Hog1 interaction with osmoresponsive genes in the extremely halotolerant black yeast Hortaea werneckii
Authors
- Tomaž Vaupotič
- Ana Plemenitaš
- Content type: Research article
- Open Access
- Published: 16 August 2007
- Article: 280
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Biomarker discovery for colon cancer using a 761 gene RT-PCR assay
Authors (first, second and last of 11)
- Kim M Clark-Langone
- Jenny Y Wu
- Maureen T Cronin
- Content type: Methodology article
- Open Access
- Published: 15 August 2007
- Article: 279
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Validation of rice genome sequence by optical mapping
Authors (first, second and last of 11)
- Shiguo Zhou
- Michael C Bechner
- David C Schwartz
- Content type: Research article
- Open Access
- Published: 15 August 2007
- Article: 278
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Microarray amplification bias: loss of 30% differentially expressed genes due to long probe – poly(A)-tail distances
Authors (first, second and last of 9)
- Mirjam C Boelens
- Gerard J te Meerman
- Anke van den Berg
- Content type: Research article
- Open Access
- Published: 15 August 2007
- Article: 277
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Quantitative multiplex detection of plant pathogens using a novel ligation probe-based system coupled with universal, high-throughput real-time PCR on OpenArrays™
Authors (first, second and last of 7)
- Ronald van Doorn
- Marianna Szemes
- Cor D Schoen
- Content type: Methodology article
- Open Access
- Published: 14 August 2007
- Article: 276
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WASP: a Web-based Allele-Specific PCR assay designing tool for detecting SNPs and mutations
Authors (first, second and last of 7)
- Pongsakorn Wangkumhang
- Kridsadakorn Chaichoompu
- Sissades Tongsima
- Content type: Software
- Open Access
- Published: 14 August 2007
- Article: 275
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An evaluation of Comparative Genome Sequencing (CGS) by comparing two previously-sequenced bacterial genomes
Authors
- Christopher D Herring
- Bernhard Ø Palsson
- Content type: Research article
- Open Access
- Published: 14 August 2007
- Article: 274
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Mapping of oxidative stress responses of human tumor cells following photodynamic therapy using hexaminolevulinate
Authors (first, second and last of 7)
- Lina Cekaite
- Qian Peng
- Eivind Hovig
- Content type: Research article
- Open Access
- Published: 13 August 2007
- Article: 273
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Expressed sequences tags of the anther smut fungus, Microbotryum violaceum, identify mating and pathogenicity genes
Authors (first, second and last of 10)
- Roxana Yockteng
- Sylvain Marthey
- Tatiana Giraud
- Content type: Research article
- Open Access
- Published: 10 August 2007
- Article: 272
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Identification of conserved domains in the promoter regions of nitric oxide synthase 2: implications for the species-specific transcription and evolutionary differences
Authors (first, second and last of 4)
- Daniel Rico
- Juan M Vaquerizas
- Lisardo Boscá
- Content type: Research article
- Open Access
- Published: 08 August 2007
- Article: 271
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De novo protein sequence analysis of Macaca mulatta
Authors
- Nilesh S Tannu
- Scott E Hemby
- Content type: Research article
- Open Access
- Published: 08 August 2007
- Article: 270
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ESTs and EST-linked polymorphisms for genetic mapping and phylogenetic reconstruction in the guppy, Poecilia reticulata
Authors (first, second and last of 10)
- Christine Dreyer
- Margarete Hoffmann
- Detlef Weigel
- Content type: Research article
- Open Access
- Published: 08 August 2007
- Article: 269
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Altered expression of mitochondrial and extracellular matrix genes in the heart of human fetuses with chromosome 21 trisomy
Authors (first, second and last of 11)
- Anna Conti
- Floriana Fabbrini
- Lucio Nitsch
- Content type: Research article
- Open Access
- Published: 07 August 2007
- Article: 268
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Gene expression of transporters and phase I/II metabolic enzymes in murine small intestine during fasting
Authors (first, second and last of 6)
- Heleen M van den Bosch
- Meike Bünger
- Michael Müller
- Content type: Research article
- Open Access
- Published: 07 August 2007
- Article: 267
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SNPs in Multi-Species Conserved Sequences (MCS) as useful markers in association studies: a practical approach
Authors (first, second and last of 10)
- Jacob L McCauley
- Shannon J Kenealy
- Douglas P Mortlock
- Content type: Methodology article
- Open Access
- Published: 06 August 2007
- Article: 266
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Inference of transcriptional regulation using gene expression data from the bovine and human genomes
Authors
- Amonida Zadissa
- John C McEwan
- Chris M Brown
- Content type: Research article
- Open Access
- Published: 03 August 2007
- Article: 265
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Genomic expression during human myelopoiesis
Authors (first, second and last of 9)
- Francesco Ferrari
- Stefania Bortoluzzi
- Sergio Ferrari
- Content type: Research article
- Open Access
- Published: 03 August 2007
- Article: 264
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A yeast model for target-primed (non-LTR) retrotransposition
Authors
- Timothy JD Goodwin
- Jason N Busby
- Russell TM Poulter
- Content type: Research article
- Open Access
- Published: 03 August 2007
- Article: 263
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Development of a physical map of the soybean pathogen Fusarium virguliforme based on synteny with Fusarium graminearum genomic DNA
Authors (first, second and last of 4)
- Jeffry L Shultz
- Sikander Ali
- David A Lightfoot
- Content type: Research article
- Open Access
- Published: 03 August 2007
- Article: 262
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New pleiotropic effects of eliminating a rare tRNA from Streptomyces coelicolor, revealed by combined proteomic and transcriptomic analysis of liquid cultures
Authors (first, second and last of 7)
- Andy Hesketh
- Giselda Bucca
- Keith F Chater
- Content type: Research article
- Open Access
- Published: 02 August 2007
- Article: 261
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Genome-wide analysis of ABA-responsive elements ABRE and CE3 reveals divergent patterns in Arabidopsis and rice
Authors (first, second and last of 5)
- Judith L Gómez-Porras
- Diego Mauricio Riaño-Pachón
- Bernd Mueller-Roeber
- Content type: Research article
- Open Access
- Published: 01 August 2007
- Article: 260
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Evolutionary genomics of plant genes encoding N-terminal-TM-C2 domain proteins and the similar FAM62 genes and synaptotagmin genes of metazoans
Authors
- Molly Craxton
- Content type: Research article
- Open Access
- Published: 31 July 2007
- Article: 259
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EGFR associated expression profiles vary with breast tumor subtype
Authors (first, second and last of 11)
- Katherine A Hoadley
- Victor J Weigman
- Charles M Perou
- Content type: Research article
- Open Access
- Published: 31 July 2007
- Article: 258
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RScan: fast searching structural similarities for structured RNAs in large databases
Authors
- Chenghai Xue
- Guo-Ping Liu
- Content type: Software
- Open Access
- Published: 31 July 2007
- Article: 257
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Integrative characterization of germ cell-specific genes from mouse spermatocyte UniGene library
Authors (first, second and last of 10)
- Eunyoung Choi
- Jiae Lee
- Chunghee Cho
- Content type: Research article
- Open Access
- Published: 28 July 2007
- Article: 256
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cDNA sequences reveal considerable gene prediction inaccuracy in the Plasmodium falciparum genome
Authors (first, second and last of 7)
- Fangli Lu
- Hongying Jiang
- Xin-zhuan Su
- Content type: Research article
- Open Access
- Published: 27 July 2007
- Article: 255
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A high resolution radiation hybrid map of bovine chromosome 14 identifies scaffold rearrangement in the latest bovine assembly
Authors (first, second and last of 7)
- Elisa Marques
- Simon de Givry
- Stephen S Moore
- Content type: Research article
- Open Access
- Published: 26 July 2007
- Article: 254
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V1R promoters are well conserved and exhibit common putative regulatory motifs
Authors
- Robert Stewart
- Robert P Lane
- Content type: Research article
- Open Access
- Published: 25 July 2007
- Article: 253
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The functional modulation of epigenetic regulators by alternative splicing
Authors (first, second and last of 4)
- Sergio Lois
- Noemí Blanco
- Xavier de la Cruz
- Content type: Research article
- Open Access
- Published: 25 July 2007
- Article: 252
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Genomic organization of duplicated major histocompatibility complex class I regions in Atlantic salmon (Salmo salar)
Authors (first, second and last of 11)
- Morten F Lukacs
- Håvard Harstad
- Ben F Koop
- Content type: Research article
- Open Access
- Published: 25 July 2007
- Article: 251
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TrED: the Trichophyton rubrum Expression Database
Authors (first, second and last of 6)
- Jian Yang
- Lihong Chen
- Qi Jin
- Content type: Database
- Open Access
- Published: 25 July 2007
- Article: 250
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Identification of unannotated exons of low abundance transcripts in Drosophila melanogaster and cloning of a new serine protease gene upregulated upon injury
Authors (first, second and last of 14)
- Rafaela M Maia
- Valeria Valente
- Maria L Paçó-Larson
- Content type: Research article
- Open Access
- Published: 24 July 2007
- Article: 249
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Complete sequence and organization of Antheraea pernyi nucleopolyhedrovirus, a dr-rich baculovirus
Authors (first, second and last of 15)
- Zuo-Ming Nie
- Zhi-Fang Zhang
- Yao-Zhou Zhang
- Content type: Research article
- Open Access
- Published: 24 July 2007
- Article: 248
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Template switching can create complex LTR retrotransposon insertions in Triticeae genomes
Authors
- François Sabot
- Alan H Schulman
- Content type: Research article
- Open Access
- Published: 24 July 2007
- Article: 247
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EasyGO: Gene Ontology-based annotation and functional enrichment analysis tool for agronomical species
Authors
- Xin Zhou
- Zhen Su
- Content type: Database
- Open Access
- Published: 24 July 2007
- Article: 246
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Comparative genomics of bacterial and plant folate synthesis and salvage: predictions and validations
Authors (first, second and last of 5)
- Valérie de Crécy-Lagard
- Basma El Yacoubi
- Andrew D Hanson
- Content type: Research article
- Open Access
- Published: 23 July 2007
- Article: 245
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Use of tiling array data and RNA secondary structure predictions to identify noncoding RNA genes
Authors (first, second and last of 4)
- Christian Weile
- Paul P Gardner
- Jeppe Vinther
- Content type: Research article
- Open Access
- Published: 23 July 2007
- Article: 244
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De-regulation of common housekeeping genes in hepatocellular carcinoma
Authors
- Samuel Waxman
- Elisa Wurmbach
- Content type: Research article
- Open Access
- Published: 18 July 2007
- Article: 243
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MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress
Authors (first, second and last of 7)
- Rita Arora
- Pinky Agarwal
- Sanjay Kapoor
- Content type: Research article
- Open Access
- Published: 18 July 2007
- Article: 242
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A complete mitochondrial genome sequence of the wild two-humped camel (Camelus bactrianus ferus): an evolutionary history of camelidae
Authors (first, second and last of 9)
- Peng Cui
- Rimutu Ji
- Heping Zhang
- Content type: Research article
- Open Access
- Published: 18 July 2007
- Article: 241
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Expression profiling in vivo demonstrates rapid changes in lung microRNA levels following lipopolysaccharide-induced inflammation but not in the anti-inflammatory action of glucocorticoids
Authors (first, second and last of 6)
- Sterghios A Moschos
- Andrew E Williams
- Mark A Lindsay
- Content type: Research article
- Open Access
- Published: 17 July 2007
- Article: 240
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Genotypic variation in genome-wide transcription profiles induced by insect feeding: Brassica oleracea – Pieris rapae interactions
Authors (first, second and last of 6)
- Colette Broekgaarden
- Erik H Poelman
- Ben Vosman
- Content type: Research article
- Open Access
- Published: 17 July 2007
- Article: 239
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Incorporation of genetic model parameters for cost-effective designs of genetic association studies using DNA pooling
Authors (first, second and last of 5)
- Fei Ji
- Stephen J Finch
- Derek Gordon
- Content type: Methodology article
- Open Access
- Published: 16 July 2007
- Article: 238
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Whole genome expression profiling reveals a significant role for immune function in human abdominal aortic aneurysms
Authors (first, second and last of 6)
- Guy M Lenk
- Gerard Tromp
- Helena Kuivaniemi
- Content type: Research article
- Open Access
- Published: 16 July 2007
- Article: 237
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Putative prophages related to lytic tailless marine dsDNA phage PM2 are widespread in the genomes of aquatic bacteria
Authors
- Mart Krupovič
- Dennis H Bamford
- Content type: Research article
- Open Access
- Published: 16 July 2007
- Article: 236
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The 10 sea urchin receptor for egg jelly proteins (SpREJ) are members of the polycystic kidney disease-1 (PKD1) family
Authors (first, second and last of 6)
- H Jayantha Gunaratne
- Gary W Moy
- Victor D Vacquier
- Content type: Research article
- Open Access
- Published: 13 July 2007
- Article: 235
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Variant Surface Glycoprotein gene repertoires in Trypanosoma brucei have diverged to become strain-specific
Authors (first, second and last of 7)
- O Clyde Hutchinson
- Kim Picozzi
- Mark Carrington
- Content type: Research article
- Open Access
- Published: 13 July 2007
- Article: 234
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Fungal CSL transcription factors
Authors
- Martin Převorovský
- František Půta
- Petr Folk
- Content type: Research article
- Open Access
- Published: 13 July 2007
- Article: 233
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An analysis of expression patterns of genes encoding proteins with catalytic activities
Authors (first, second and last of 14)
- Murat Cankaya
- Ana Martinez Hernandez
- Omer Irfan Kufrevioglu
- Content type: Research article
- Open Access
- Published: 12 July 2007
- Article: 232