Volume 8, issue 1, December 2007
481 articles in this issue
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Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing
Authors (first, second and last of 12)
- Jessica A Schlueter
- Jer-Young Lin
- Randy C Shoemaker
- Content type: Research article
- Open Access
- Published: 19 September 2007
- Article: 330
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Quantitative measurement of pathogen specific human memory T cell repertoire diversity using a CDR3β-specific microarray
Authors (first, second and last of 7)
- Xujing Wang
- Shuang Jia
- Martin J Hessner
- Content type: Methodology article
- Open Access
- Published: 19 September 2007
- Article: 329
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Effect of starvation on global gene expression and proteolysis in rainbow trout (Oncorhynchus mykiss)
Authors (first, second and last of 4)
- Mohamed Salem
- Jeff Silverstein
- Jianbo Yao
- Content type: Research article
- Open Access
- Published: 19 September 2007
- Article: 328
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The cys-loop ligand-gated ion channel gene superfamily of the red flour beetle, Tribolium castaneum
Authors
- Andrew K Jones
- David B Sattelle
- Content type: Research article
- Open Access
- Published: 19 September 2007
- Article: 327
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Analysis of the immune-inducible transcriptome from microbial stress resistant, rat-tailed maggots of the drone fly Eristalis tenax
Authors
- Boran Altincicek
- Andreas Vilcinskas
- Content type: Research article
- Open Access
- Published: 17 September 2007
- Article: 326
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Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina
Authors (first, second and last of 7)
- Mikko Arvas
- Teemu Kivioja
- Stephen Oliver
- Content type: Research article
- Open Access
- Published: 17 September 2007
- Article: 325
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The nicotinic acetylcholine receptor gene family of the silkworm, Bombyx mori
Authors
- Ya-Ming Shao
- Ke Dong
- Chuan-Xi Zhang
- Content type: Research article
- Open Access
- Published: 15 September 2007
- Article: 324
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Adaptive expression responses in the Pol-γ null strain of S. pombe depleted of mitochondrial genome
Authors (first, second and last of 6)
- Zhaoqing Chu
- Juntao Li
- Jianhua Liu
- Content type: Research article
- Open Access
- Published: 15 September 2007
- Article: 323
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ChIP on SNP-chip for genome-wide analysis of human histone H4 hyperacetylation
Authors (first, second and last of 7)
- Jennifer A McCann
- Enrique M Muro
- Michael A Rudnicki
- Content type: Methodology article
- Open Access
- Published: 14 September 2007
- Article: 322
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Optical mapping as a routine tool for bacterial genome sequence finishing
Authors (first, second and last of 14)
- Phil Latreille
- Stacie Norton
- Steven Slater
- Content type: Methodology article
- Open Access
- Published: 14 September 2007
- Article: 321
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The extracellular Leucine-Rich Repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns
Authors (first, second and last of 9)
- Jackie Dolan
- Karen Walshe
- Kevin J Mitchell
- Content type: Research article
- Open Access
- Published: 14 September 2007
- Article: 320
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A Marfan syndrome gene expression phenotype in cultured skin fibroblasts
Authors (first, second and last of 9)
- Zizhen Yao
- Jochen C Jaeger
- Eileen R Mulvihill
- Content type: Research article
- Open Access
- Published: 12 September 2007
- Article: 319
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Alternative splicing of TGF-betas and their high-affinity receptors TβRI, TβRII and TβRIII (betaglycan) reveal new variants in human prostatic cells
Authors (first, second and last of 9)
- Lutz Konrad
- Jonas A Scheiber
- Rainer Hofmann
- Content type: Research article
- Open Access
- Published: 11 September 2007
- Article: 318
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Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni
Authors (first, second and last of 4)
- Simone Hoegg
- Jeffrey L Boore
- Axel Meyer
- Content type: Research article
- Open Access
- Published: 10 September 2007
- Article: 317
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Detection of RNA structures in porcine EST data and related mammals
Authors (first, second and last of 5)
- Stefan E Seemann
- Michael J Gilchrist
- Jan Gorodkin
- Content type: Research article
- Open Access
- Published: 10 September 2007
- Article: 316
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Giant panda BAC library construction and assembly of a 650-kb contig spanning major histocompatibility complex class II region
Authors (first, second and last of 6)
- Chang-Jun Zeng
- Hui-Juan Pan
- Sheng-Guo Fang
- Content type: Research article
- Open Access
- Published: 08 September 2007
- Article: 315
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End-sequencing and characterization of silkworm (Bombyx mori) bacterial artificial chromosome libraries
Authors (first, second and last of 7)
- Yoshitaka Suetsugu
- Hiroshi Minami
- Kimiko Yamamoto
- Content type: Research article
- Open Access
- Published: 07 September 2007
- Article: 314
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Characterization of the equine 2'-5' oligoadenylate synthetase 1 (OAS1) and ribonuclease L (RNASEL) innate immunity genes
Authors (first, second and last of 7)
- Jonathan J Rios
- Andrey A Perelygin
- David L Adelson
- Content type: Research article
- Open Access
- Published: 07 September 2007
- Article: 313
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Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications
Authors (first, second and last of 5)
- Nicol Siegel
- Simone Hoegg
- Axel Meyer
- Content type: Research article
- Open Access
- Published: 06 September 2007
- Article: 312
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A transcriptomic analysis of the adult stage of the bovine lungworm, Dictyocaulus viviparus
Authors (first, second and last of 6)
- Shoba Ranganathan
- Shivashankar H Nagaraj
- Robin B Gasser
- Content type: Research article
- Open Access
- Published: 05 September 2007
- Article: 311
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High resolution radiation hybrid maps of bovine chromosomes 19 and 29: comparison with the bovine genome sequence assembly
Authors (first, second and last of 8)
- Aparna Prasad
- Thomas Schiex
- Stephen S Moore
- Content type: Research article
- Open Access
- Published: 04 September 2007
- Article: 310
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The complement of protein kinases of the microsporidium Encephalitozoon cuniculi in relation to those of Saccharomyces cerevisiae and Schizosaccharomyces pombe
Authors (first, second and last of 6)
- Diego Miranda-Saavedra
- Michael JR Stark
- Geoffrey J Barton
- Content type: Research article
- Open Access
- Published: 04 September 2007
- Article: 309
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Architecture of Burkholderia cepacia complex σ70 gene family: evidence of alternative primary and clade-specific factors, and genomic instability
Authors (first, second and last of 4)
- Aymeric Menard
- Paulina Estrada de los Santos
- Benoit Cournoyer
- Content type: Research article
- Open Access
- Published: 04 September 2007
- Article: 308
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Living with an imperfect cell wall: compensation of femAB inactivation in Staphylococcus aureus
Authors (first, second and last of 9)
- Judith Hübscher
- Andrea Jansen
- Brigitte Berger-Bächi
- Content type: Research article
- Open Access
- Published: 04 September 2007
- Article: 307
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MELOGEN: an EST database for melon functional genomics
Authors (first, second and last of 14)
- Daniel Gonzalez-Ibeas
- José Blanca
- Miguel A Aranda
- Content type: Research article
- Open Access
- Published: 03 September 2007
- Article: 306
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Genome-wide genetic aberrations of thymoma using cDNA microarray based comparative genomic hybridization
Authors (first, second and last of 8)
- Gui Youn Lee
- Woo Ick Yang
- Sun Young Rha
- Content type: Research article
- Open Access
- Published: 03 September 2007
- Article: 305
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Putative cold acclimation pathways in Arabidopsis thaliana identified by a combined analysis of mRNA co-expression patterns, promoter motifs and transcription factors
Authors (first, second and last of 5)
- Aakash Chawade
- Marcus Bräutigam
- Björn Olsson
- Content type: Research article
- Open Access
- Published: 02 September 2007
- Article: 304
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Transcriptional profiling of chickpea genes differentially regulated in response to high-salinity, cold and drought
Authors (first, second and last of 4)
- Nitin L Mantri
- Rebecca Ford
- Edwin CK Pang
- Content type: Research article
- Open Access
- Published: 02 September 2007
- Article: 303
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Gene expression profiling reveals different pathways related to Abl and other genes that cooperate with c-Myc in a model of plasma cell neoplasia
Authors (first, second and last of 11)
- Eun Sung Park
- John D Shaughnessy Jr
- J Frederic Mushinski
- Content type: Research article
- Open Access
- Published: 31 August 2007
- Article: 302
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Glycerate kinase of the hyperthermophilic archaeon Thermoproteus tenax: new insights into the phylogenetic distribution and physiological role of members of the three different glycerate kinase classes
Authors (first, second and last of 4)
- Daniel Kehrer
- Hatim Ahmed
- Bettina Siebers
- Content type: Research article
- Open Access
- Published: 31 August 2007
- Article: 301
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Exploring the midgut transcriptome of Phlebotomus papatasi: comparative analysis of expression profiles of sugar-fed, blood-fed and Leishmania major-infected sandflies
Authors (first, second and last of 7)
- Marcelo Ramalho-Ortigão
- Ryan C Jochim
- Jesus G Valenzuela
- Content type: Research article
- Open Access
- Published: 30 August 2007
- Article: 300
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Genomewide high-density SNP linkage analysis of non-BRCA1/2 breast cancer families identifies various candidate regions and has greater power than microsatellite studies
Authors (first, second and last of 14)
- Anna Gonzalez-Neira
- Juan Manuel Rosa-Rosa
- Javier Benitez
- Content type: Research article
- Open Access
- Published: 30 August 2007
- Article: 299
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Revised genomic structure of the human ghrelin gene and identification of novel exons, alternative splice variants and natural antisense transcripts
Authors (first, second and last of 4)
- Inge Seim
- Chris Collet
- Lisa K Chopin
- Content type: Research article
- Open Access
- Published: 30 August 2007
- Article: 298
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Effect of active smoking on the human bronchial epithelium transcriptome
Authors (first, second and last of 6)
- Raj Chari
- Kim M Lonergan
- Stephen Lam
- Content type: Research article
- Open Access
- Published: 29 August 2007
- Article: 297
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cis sequence effects on gene expression
Authors (first, second and last of 11)
- Andrew W Bergen
- Andrea Baccarelli
- Meredith Yeager
- Content type: Research article
- Open Access
- Published: 29 August 2007
- Article: 296
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Non-coding antisense transcription detected by conventional and single-stranded cDNA microarray
Authors (first, second and last of 6)
- Johan Vallon-Christersson
- Johan Staaf
- Carlos Rovira
- Content type: Research article
- Open Access
- Published: 29 August 2007
- Article: 295
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Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton
Authors (first, second and last of 9)
- Jean Muller
- André Mehlen
- Laurent Vallar
- Content type: Methodology article
- Open Access
- Published: 29 August 2007
- Article: 294
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The mitochondrial DNA control region shows genetically correlated levels of heteroplasmy in leukocytes of centenarians and their offspring
Authors (first, second and last of 12)
- Giuseppina Rose
- Giuseppe Passarino
- Giovanna De Benedictis
- Content type: Research article
- Open Access
- Published: 29 August 2007
- Article: 293
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Short-term oleoyl-estrone treatment affects capacity to manage lipids in rat adipose tissue
Authors (first, second and last of 6)
- Anna Salas
- Véronique Noé
- Montserrat Esteve
- Content type: Research article
- Open Access
- Published: 28 August 2007
- Article: 292
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Exonization of the LTR transposable elements in human genome
Authors (first, second and last of 4)
- Jittima Piriyapongsa
- Nalini Polavarapu
- John McDonald
- Content type: Research article
- Open Access
- Published: 28 August 2007
- Article: 291
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Diverse genome structures of Salmonella paratyphi C
Authors (first, second and last of 10)
- Wei-Qiao Liu
- Gui-Rong Liu
- Shu-Lin Liu
- Content type: Research article
- Open Access
- Published: 27 August 2007
- Article: 290
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GntR family of regulators in Mycobacterium smegmatis: a sequence and structure based characterization
Authors
- Vaibhav Vindal
- Katta Suma
- Akash Ranjan
- Content type: Research article
- Open Access
- Published: 23 August 2007
- Article: 289
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A rapid genome-wide response to Drosophila melanogaster social interactions
Authors
- Ginger E Carney
- Content type: Research article
- Open Access
- Published: 22 August 2007
- Article: 288
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Early activation of quorum sensing in Pseudomonas aeruginosa reveals the architecture of a complex regulon
Authors
- Martin Schuster
- E Peter Greenberg
- Content type: Research article
- Open Access
- Published: 22 August 2007
- Article: 287
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Quantitative analysis of mutation and selection pressures on base composition skews in bacterial chromosomes
Authors
- Chi Chen
- Carton W Chen
- Content type: Research article
- Open Access
- Published: 21 August 2007
- Article: 286
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Genome-wide polysomal analysis of a yeast strain with mutated ribosomal protein S9
Authors
- Lilach Pnueli
- Yoav Arava
- Content type: Research article
- Open Access
- Published: 21 August 2007
- Article: 285
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A detailed transcript-level probe annotation reveals alternative splicing based microarray platform differences
Authors (first, second and last of 4)
- Joseph C Lee
- David Stiles
- Margaret C Cam
- Content type: Research article
- Open Access
- Published: 20 August 2007
- Article: 284
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Rice pseudomolecule-anchored cross-species DNA sequence alignments indicate regional genomic variation in expressed sequence conservation
Authors (first, second and last of 6)
- Ian Armstead
- Lin Huang
- Ian King
- Content type: Research article
- Open Access
- Published: 20 August 2007
- Article: 283
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Optimization of candidate-gene SNP-genotyping by flexible oligonucleotide microarrays; analyzing variations in immune regulator genes of hay-fever samples
Authors (first, second and last of 6)
- Janne Pullat
- Robert Fleischer
- Jörg D Hoheisel
- Content type: Methodology article
- Open Access
- Published: 17 August 2007
- Article: 282