Volume 8, issue 1, December 2007
481 articles in this issue
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Proteomics reveals multiple routes to the osteogenic phenotype in mesenchymal stem cells
Authors (first, second and last of 7)
- Kristin P Bennett
- Charles Bergeron
- George E Plopper
- Content type: Research article
- Open Access
- Published: 19 October 2007
- Article: 380
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Effects of iron loading on muscle: genome-wide mRNA expression profiling in the mouse
Authors (first, second and last of 7)
- Alejandra Rodriguez
- Mika Hilvo
- Seppo Parkkila
- Content type: Research article
- Open Access
- Published: 19 October 2007
- Article: 379
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Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
Authors (first, second and last of 5)
- Simon Minovitsky
- Philip Stegmaier
- Inna Dubchak
- Content type: Research article
- Open Access
- Published: 18 October 2007
- Article: 378
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Optimization of cDNA microarrays procedures using criteria that do not rely on external standards
Authors (first, second and last of 6)
- Torunn Bruland
- Endre Anderssen
- Astrid Lægreid
- Content type: Methodology article
- Open Access
- Published: 18 October 2007
- Article: 377
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Intrinsic androgen-dependent gene expression patterns revealed by comparison of genital fibroblasts from normal males and individuals with complete and partial androgen insensitivity syndrome
Authors (first, second and last of 12)
- Paul-Martin Holterhus
- Uta Deppe
- James D Brooks
- Content type: Research article
- Open Access
- Published: 18 October 2007
- Article: 376
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A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria
Authors (first, second and last of 4)
- Björn Voß
- Gregor Gierga
- Wolfgang R Hess
- Content type: Research article
- Open Access
- Published: 17 October 2007
- Article: 375
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MetaProm: a neural network based meta-predictor for alternative human promoter prediction
Authors (first, second and last of 4)
- Junwen Wang
- Lyle H Ungar
- Sridhar Hannenhalli
- Content type: Research article
- Open Access
- Published: 17 October 2007
- Article: 374
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Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays
Authors (first, second and last of 5)
- Shingo Suzuki
- Naoaki Ono
- Tetsuya Yomo
- Content type: Research article
- Open Access
- Published: 16 October 2007
- Article: 373
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Sequences conserved by selection across mouse and human malaria species
Authors
- Hideo Imamura
- Jason H Persampieri
- Jeffrey H Chuang
- Content type: Research article
- Open Access
- Published: 15 October 2007
- Article: 372
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Frame disruptions in human mRNA transcripts, and their relationship with splicing and protein structures
Authors
- Paul Harrison
- Zhan Yu
- Content type: Research article
- Open Access
- Published: 15 October 2007
- Article: 371
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The functional genome of CA1 and CA3 neurons under native conditions and in response to ischemia
Authors (first, second and last of 16)
- Dieter Newrzella
- Payam S Pahlavan
- Armin Schneider
- Content type: Research article
- Open Access
- Published: 15 October 2007
- Article: 370
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Separating the effects of mutation and selection in producing DNA skew in bacterial chromosomes
Authors
- Richard A Morton
- Brian R Morton
- Content type: Research article
- Open Access
- Published: 12 October 2007
- Article: 369
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Global comparative analysis of ESTs from the southern cattle tick, Rhipicephalus (Boophilus) microplus
Authors (first, second and last of 4)
- Minghua Wang
- Felix D Guerrero
- Vishvanath M Nene
- Content type: Research article
- Open Access
- Published: 12 October 2007
- Article: 368
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EST analysis on pig mitochondria reveal novel expression differences between developmental and adult tissues
Authors (first, second and last of 5)
- Karsten Scheibye-Alsing
- Susanna Cirera
- Jan Gorodkin
- Content type: Research article
- Open Access
- Published: 11 October 2007
- Article: 367
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Separate base usages of genes located on the leading and lagging strands in Chlamydia muridarum revealed by the Z curve method
Authors
- Feng-Biao Guo
- Xiu-Juan Yu
- Content type: Research article
- Open Access
- Published: 10 October 2007
- Article: 366
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Dynamic transcription programs during ES cell differentiation towards mesoderm in serum versus serum-freeBMP4 culture
Authors (first, second and last of 6)
- Stephen J Bruce
- Brooke B Gardiner
- Andrew C Perkins
- Content type: Research article
- Open Access
- Published: 10 October 2007
- Article: 365
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Identification of genes that regulate multiple cellular processes/responses in the context of lipotoxicity to hepatoma cells
Authors (first, second and last of 6)
- Shireesh Srivastava
- Zheng Li
- Christina Chan
- Content type: Research article
- Open Access
- Published: 09 October 2007
- Article: 364
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A method for the construction of equalized directional cDNA libraries from hydrolyzed total RNA
Authors
- Claytus Davis
- Zeev Barvish
- Inna Gitelman
- Content type: Methodology article
- Open Access
- Published: 09 October 2007
- Article: 363
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Gene profile analysis of osteoblast genes differentially regulated by histone deacetylase inhibitors
Authors (first, second and last of 5)
- Tania M Schroeder
- Aswathy K Nair
- Jennifer J Westendorf
- Content type: Research article
- Open Access
- Published: 09 October 2007
- Article: 362
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Fasting induces a biphasic adaptive metabolic response in murine small intestine
Authors (first, second and last of 11)
- Milka Sokolović
- Diederik Wehkamp
- Wouter H Lamers
- Content type: Research article
- Open Access
- Published: 09 October 2007
- Article: 361
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Tripartite chimeric pseudogene from the genome of rice blast fungus Magnaporthe grisea suggests double template jumps during long interspersed nuclear element (LINE) reverse transcription
Authors (first, second and last of 4)
- Elena Gogvadze
- Crystel Barbisan
- Anton Buzdin
- Content type: Research article
- Open Access
- Published: 08 October 2007
- Article: 360
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Comparative genomic analysis of Campylobacter jejuni associated with Guillain-Barré and Miller Fisher syndromes: neuropathogenic and enteritis-associated isolates can share high levels of genomic similarity
Authors (first, second and last of 9)
- Eduardo N Taboada
- Alex van Belkum
- John HE Nash
- Content type: Research article
- Open Access
- Published: 05 October 2007
- Article: 359
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From transcriptome to biological function: environmental stress in an ectothermic vertebrate, the coral reef fish Pomacentrus moluccensis
Authors (first, second and last of 5)
- Karin S Kassahn
- Ross H Crozier
- M Julian Caley
- Content type: Research article
- Open Access
- Published: 05 October 2007
- Article: 358
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Androgen-induced masculinization in rainbow trout results in a marked dysregulation of early gonadal gene expression profiles
Authors (first, second and last of 5)
- Daniel Baron
- Jérôme Montfort
- Yann Guiguen
- Content type: Research article
- Open Access
- Published: 04 October 2007
- Article: 357
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Wide diversity in structure and expression profiles among members of the Caenorhabditis elegans globin protein family
Authors (first, second and last of 7)
- David Hoogewijs
- Eva Geuens
- Jacques R Vanfleteren
- Content type: Research article
- Open Access
- Published: 04 October 2007
- Article: 356
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Genetic diversity of the obligate intracellular bacterium Chlamydophila pneumoniae by genome-wide analysis of single nucleotide polymorphisms: evidence for highly clonal population structure
Authors (first, second and last of 9)
- Thomas Rattei
- Stephan Ott
- Jens Gieffers
- Content type: Research article
- Open Access
- Published: 04 October 2007
- Article: 355
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Expression and water calcium dependence of calcium transporter isoforms in zebrafish gill mitochondrion-rich cells
Authors (first, second and last of 5)
- Bo-Kai Liao
- Ang-Ni Deng
- Pung-Pung Hwang
- Content type: Research article
- Open Access
- Published: 04 October 2007
- Article: 354
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Gene expression profiling of long-lived dwarf mice: longevity-associated genes and relationships with diet, gender and aging
Authors
- William R Swindell
- Content type: Research article
- Open Access
- Published: 03 October 2007
- Article: 353
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Co-expression of adjacent genes in yeast cannot be simply attributed to shared regulatory system
Authors (first, second and last of 5)
- Huai-Kuang Tsai
- Cindy PC Su
- Daryi Wang
- Content type: Research article
- Open Access
- Published: 03 October 2007
- Article: 352
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SAMMD: Staphylococcus aureus Microarray Meta-Database
Authors
- Vijayaraj Nagarajan
- Mohamed O Elasri
- Content type: Database
- Open Access
- Published: 02 October 2007
- Article: 351
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Cadmium triggers an integrated reprogramming of the metabolism of Synechocystis PCC6803, under the control of the Slr1738 regulator
Authors (first, second and last of 9)
- Laetitia Houot
- Martin Floutier
- Franck Chauvat
- Content type: Research article
- Open Access
- Published: 02 October 2007
- Article: 350
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Comparative genomic analysis of Tropheryma whipplei strains reveals that diversity among clinical isolates is mainly related to the WiSP proteins
Authors (first, second and last of 5)
- My-Van La
- Nicolas Crapoulet
- Patricia Renesto
- Content type: Research article
- Open Access
- Published: 02 October 2007
- Article: 349
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RBM6-RBM5 transcription-induced chimeras are differentially expressed in tumours
Authors
- Ke Wang
- Gino Ubriaco
- Leslie C Sutherland
- Content type: Research article
- Open Access
- Published: 01 October 2007
- Article: 348
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Abundance and functional diversity of riboswitches in microbial communities
Authors
- Marat D Kazanov
- Alexey G Vitreschak
- Mikhail S Gelfand
- Content type: Research article
- Open Access
- Published: 01 October 2007
- Article: 347
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Characterization of oligopeptide patterns in large protein sets
Authors
- Anders Bresell
- Bengt Persson
- Content type: Research article
- Open Access
- Published: 01 October 2007
- Article: 346
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DNA copy number profiles of gastric cancer precursor lesions
Authors (first, second and last of 15)
- Tineke E Buffart
- Beatriz Carvalho
- Gerrit A Meijer
- Content type: Research article
- Open Access
- Published: 01 October 2007
- Article: 345
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Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection
Authors (first, second and last of 5)
- Neil S Graham
- Martin R Broadley
- Sean T May
- Content type: Research article
- Open Access
- Published: 01 October 2007
- Article: 344
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The complete mitochondrial genome of the sea spider Achelia bituberculata (Pycnogonida, Ammotheidae): arthropod ground pattern of gene arrangement
Authors
- Shin-Ju Park
- Yong-Seok Lee
- Ui Wook Hwang
- Content type: Research article
- Open Access
- Published: 01 October 2007
- Article: 343
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Characterizing partial AZFc deletions of the Y chromosome with amplicon-specific sequence markers
Authors (first, second and last of 16)
- Paulo Navarro-Costa
- LuÃsa Pereira
- João Gonçalves
- Content type: Research article
- Open Access
- Published: 28 September 2007
- Article: 342
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Collembase: a repository for springtail genomics and soil quality assessment
Authors (first, second and last of 8)
- Martijn JTN Timmermans
- Muriel E de Boer
- Dick Roelofs
- Content type: Database
- Open Access
- Published: 27 September 2007
- Article: 341
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Comparison of the contributions of the nuclear and cytoplasmic compartments to global gene expression in human cells
Authors (first, second and last of 5)
- Roger A Barthelson
- Georgina M Lambert
- David W Galbraith
- Content type: Research article
- Open Access
- Published: 25 September 2007
- Article: 340
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Interspecies hybridization on DNA resequencing microarrays: efficiency of sequence recovery and accuracy of SNP detection in human, ape, and codfish mitochondrial DNA genomes sequenced on a human-specific MitoChip
Authors
- Sarah MC Flynn
- Steven M Carr
- Content type: Research article
- Open Access
- Published: 25 September 2007
- Article: 339
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The G protein-coupled receptor subset of the rat genome
Authors
- David E Gloriam
- Robert Fredriksson
- Helgi B Schiöth
- Content type: Research article
- Open Access
- Published: 25 September 2007
- Article: 338
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Identification of proteins involved in the functioning of Riftia pachyptila symbiosis by Subtractive Suppression Hybridization
Authors
- Sophie Sanchez
- Stéphane Hourdez
- François H Lallier
- Content type: Research article
- Open Access
- Published: 24 September 2007
- Article: 337
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Sample matching by inferred agonal stress in gene expression analyses of the brain
Authors (first, second and last of 15)
- Jun Z Li
- Fan Meng
- Richard M Myers
- Content type: Research article
- Open Access
- Published: 24 September 2007
- Article: 336
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Multiple splice variants within the bovine silver homologue (SILV) gene affecting coat color in cattle indicate a function additional to fibril formation in melanophores
Authors
- Christa Kuehn
- Rosemarie Weikard
- Content type: Research article
- Open Access
- Published: 24 September 2007
- Article: 335
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Gene discovery and transcript analyses in the corn smut pathogen Ustilago maydis: expressed sequence tag and genome sequence comparison
Authors
- Eric CH Ho
- Matt J Cahill
- Barry J Saville
- Content type: Research article
- Open Access
- Published: 24 September 2007
- Article: 334
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Deep analysis of cellular transcriptomes – LongSAGE versus classic MPSS
Authors (first, second and last of 8)
- Lawrence Hene
- Vattipally B Sreenu
- Edward J Evans
- Content type: Methodology article
- Open Access
- Published: 24 September 2007
- Article: 333
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Unravelling the hidden heterogeneities of diffuse large B-cell lymphoma based on coupled two-way clustering
Authors (first, second and last of 8)
- Wei Zhang
- Li Li
- Shaoqi Rao
- Content type: Research article
- Open Access
- Published: 22 September 2007
- Article: 332