Volume 8, issue 1, December 2007
481 articles in this issue
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A set of genes previously implicated in the hypoxia response might be an important modulator in the rat ear tissue response to mechanical stretch
Authors
- Vishal Saxena
- Dennis Orgill
- Isaac Kohane
- Content type: Methodology article
- Open Access
- Published: 23 November 2007
- Article: 430
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Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development
Authors (first, second and last of 10)
- Laurent G Deluc
- Jérôme Grimplet
- Grant R Cramer
- Content type: Research article
- Open Access
- Published: 22 November 2007
- Article: 429
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Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at vèraison
Authors (first, second and last of 10)
- Stefania Pilati
- Michele Perazzolli
- Claudio Moser
- Content type: Research article
- Open Access
- Published: 22 November 2007
- Article: 428
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Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula
Authors
- Jiří Macas
- Pavel Neumann
- Alice Navrátilová
- Content type: Research article
- Open Access
- Published: 21 November 2007
- Article: 427
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e-Fungi: a data resource for comparative analysis of fungal genomes
Authors (first, second and last of 10)
- Cornelia Hedeler
- Han Min Wong
- Norman W Paton
- Content type: Database
- Open Access
- Published: 20 November 2007
- Article: 426
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Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome
Authors
- Teresia J Buza
- Fiona M McCarthy
- Shane C Burgess
- Content type: Research article
- Open Access
- Published: 19 November 2007
- Article: 425
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High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology
Authors (first, second and last of 5)
- Diego Lijavetzky
- José Antonio Cabezas
- José M Martínez-Zapater
- Content type: Research article
- Open Access
- Published: 19 November 2007
- Article: 424
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Genomic resources for Myzus persicae: EST sequencing, SNP identification, and microarray design
Authors (first, second and last of 11)
- John S Ramsey
- Alex CC Wilson
- Georg Jander
- Content type: Research article
- Open Access
- Published: 16 November 2007
- Article: 423
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Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids
Authors (first, second and last of 4)
- Johan G de Boer
- Ryosuke Yazawa
- Ben F Koop
- Content type: Research article
- Open Access
- Published: 16 November 2007
- Article: 422
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Identification of single nucleotide polymorphisms in bovine CARD15 and their associations with health and production traits in Canadian Holsteins
Authors (first, second and last of 5)
- Sameer D Pant
- Flavio S Schenkel
- Niel A Karrow
- Content type: Research article
- Open Access
- Published: 15 November 2007
- Article: 421
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Promoter analysis of intestinal genes induced during iron-deprivation reveals enrichment of conserved SP1-like binding sites
Authors
- James F Collins
- Zihua Hu
- Content type: Research article
- Open Access
- Published: 15 November 2007
- Article: 420
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Identification of novel pathway partners of p68 and p72 RNA helicases through Oncomine meta-analysis
Authors
- Brian J Wilson
- Vincent Giguère
- Content type: Research article
- Open Access
- Published: 15 November 2007
- Article: 419
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Association of the Matrix Attachment Region Recognition Signature with coding regions in Caenorhabditis elegans
Authors
- Alasdair Anthony
- Mark Blaxter
- Content type: Research article
- Open Access
- Published: 15 November 2007
- Article: 418
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Lactation transcriptomics in the Australian marsupial, Macropus eugenii: transcript sequencing and quantification
Authors (first, second and last of 5)
- Christophe M Lefèvre
- Matthew R Digby
- Kevin R Nicholas
- Content type: Research article
- Open Access
- Published: 13 November 2007
- Article: 417
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An optimized procedure greatly improves EST vector contamination removal
Authors (first, second and last of 5)
- Yi-An Chen
- Chang-Chun Lin
- Pei-Ing Hwang
- Content type: Methodology article
- Open Access
- Published: 13 November 2007
- Article: 416
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Genome-wide analysis of growth phase-dependent translational and transcriptional regulation in halophilic archaea
Authors (first, second and last of 8)
- Christian Lange
- Alexander Zaigler
- Jörg Soppa
- Content type: Research article
- Open Access
- Published: 12 November 2007
- Article: 415
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A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis
Authors (first, second and last of 8)
- Junfeng Chen
- Vikas Agrawal
- Blake C Meyers
- Content type: Research article
- Open Access
- Published: 12 November 2007
- Article: 414
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Suicide candidate genes associated with bipolar disorder and schizophrenia: An exploratory gene expression profiling analysis of post-mortem prefrontal cortex
Authors (first, second and last of 4)
- Sanghyeon Kim
- Kwang-Ho Choi
- Howard K Gershenfeld
- Content type: Research article
- Open Access
- Published: 12 November 2007
- Article: 413
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Analysis of the hybrid proline-rich protein families from seven plant species suggests rapid diversification of their sequences and expression patterns
Authors
- Lenka Dvořáková
- Fatima Cvrčková
- Lukáš Fischer
- Content type: Research article
- Open Access
- Published: 12 November 2007
- Article: 412
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Ganoderma lucidum polysaccharides in human monocytic leukemia cells: from gene expression to network construction
Authors (first, second and last of 10)
- Kun-Chieh Cheng
- Hsuan-Cheng Huang
- Hsueh-Fen Juan
- Content type: Research article
- Open Access
- Published: 09 November 2007
- Article: 411
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Sequence analysis of an Archaeal virus isolated from a hypersaline lake in Inner Mongolia, China
Authors (first, second and last of 8)
- Eulyn Pagaling
- Richard D Haigh
- Shaun Heaphy
- Content type: Research article
- Open Access
- Published: 09 November 2007
- Article: 410
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Diversity and structure of PIF/Harbinger-like elements in the genome of Medicago truncatula
Authors (first, second and last of 5)
- Dariusz Grzebelus
- Slawomir Lasota
- Anna Gambin
- Content type: Research article
- Open Access
- Published: 09 November 2007
- Article: 409
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Global patterns of sequence evolution in Drosophila
Authors
- Miguel Gallach
- Vicente Arnau
- Ignacio Marín
- Content type: Research article
- Open Access
- Published: 09 November 2007
- Article: 408
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Analysis of Schistosoma mansoni genes shared with Deuterostomia and with possible roles in host interactions
Authors (first, second and last of 6)
- Thiago M Venancio
- Ricardo DeMarco
- Sergio Verjovski-Almeida
- Content type: Research article
- Open Access
- Published: 08 November 2007
- Article: 407
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Computational RNomics of Drosophilids
Authors (first, second and last of 8)
- Dominic Rose
- Jörg Hackermüller
- Sonja J Prohaska
- Content type: Research article
- Open Access
- Published: 08 November 2007
- Article: 406
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Gene expression profiles in testis of pigs with extreme high and low levels of androstenone
Authors (first, second and last of 9)
- Maren Moe
- Theo Meuwissen
- Eli Grindflek
- Content type: Research article
- Open Access
- Published: 07 November 2007
- Article: 405
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Vascular microarray profiling in two models of hypertension identifies caveolin-1, Rgs2 and Rgs5 as antihypertensive targets
Authors (first, second and last of 9)
- T Hilton Grayson
- Stephen J Ohms
- Caryl E Hill
- Content type: Research article
- Open Access
- Published: 07 November 2007
- Article: 404
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Poly-G/poly-C tracts in the genomes of Caenorhabditis
Authors
- Yang Zhao
- Nigel J O'Neil
- Ann M Rose
- Content type: Research article
- Open Access
- Published: 07 November 2007
- Article: 403
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Oligonucleotide Array Comparative Genomic Hybridization (oaCGH) based characterization of genetic deficiencies as an aid to gene mapping in Caenorhabditis elegans
Authors (first, second and last of 5)
- Martin R Jones
- Jason S Maydan
- David L Baillie
- Content type: Methodology article
- Open Access
- Published: 07 November 2007
- Article: 402
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Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome
Authors (first, second and last of 12)
- Sébastien Aubourg
- Marie-Laure Martin-Magniette
- Jean-Pierre Renou
- Content type: Research article
- Open Access
- Published: 02 November 2007
- Article: 401
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Innate gene repression associated with Mycobacterium bovis infection in cattle: toward a gene signature of disease
Authors (first, second and last of 9)
- Kieran G Meade
- Eamonn Gormley
- David E MacHugh
- Content type: Research article
- Open Access
- Published: 31 October 2007
- Article: 400
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The full-ORF clone resource of the German cDNA Consortium
Authors (first, second and last of 19)
- Stephanie Bechtel
- Heiko Rosenfelder
- Ingo Schupp
- Content type: Methodology article
- Open Access
- Published: 31 October 2007
- Article: 399
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Vertebrate conserved non coding DNA regions have a high persistence length and a short persistence time
Authors (first, second and last of 5)
- Dorota Retelska
- Emmanuel Beaudoing
- Philipp Bucher
- Content type: Research article
- Open Access
- Published: 31 October 2007
- Article: 398
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Comparative genomic analysis of two-component regulatory proteins in Pseudomonas syringae
Authors (first, second and last of 5)
- José L Lavín
- Kristoffer Kiil
- José A Oguiza
- Content type: Research article
- Open Access
- Published: 31 October 2007
- Article: 397
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Inter- and intra-combinatorial regulation by transcription factors and microRNAs
Authors (first, second and last of 4)
- Yiming Zhou
- John Ferguson
- Yuval Kluger
- Content type: Research article
- Open Access
- Published: 30 October 2007
- Article: 396
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Genome-wide survey of putative Serine/Threonine protein kinases in cyanobacteria
Authors (first, second and last of 6)
- Xiaowen Zhang
- Fangqing Zhao
- Song Qin
- Content type: Research article
- Open Access
- Published: 30 October 2007
- Article: 395
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Functional genomic delineation of TLR-induced transcriptional networks
Authors (first, second and last of 5)
- Ran Elkon
- Chaim Linhart
- Ron Shamir
- Content type: Research article
- Open Access
- Published: 29 October 2007
- Article: 394
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Investigation of factors affecting prediction of protein-protein interaction networks by phylogenetic profiling
Authors
- Anis Karimpour-Fard
- Lawrence Hunter
- Ryan T Gill
- Content type: Research article
- Open Access
- Published: 29 October 2007
- Article: 393
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Exonization of active mouse L1s: a driver of transcriptome evolution?
Authors (first, second and last of 6)
- Tomasz Zemojtel
- Tobias Penzkofer
- Martin Vingron
- Content type: Research article
- Open Access
- Published: 26 October 2007
- Article: 392
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Database of Trypanosoma cruzi repeated genes: 20 000 additional gene variants
Authors (first, second and last of 7)
- Erik Arner
- Ellen Kindlund
- Björn Andersson
- Content type: Research article
- Open Access
- Published: 26 October 2007
- Article: 391
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Large-scale analysis by SAGE reveals new mechanisms of v-erbA oncogene action
Authors (first, second and last of 9)
- Corinne Bresson
- Celine Keime
- Sandrine Gonin-Giraud
- Content type: Research article
- Open Access
- Published: 26 October 2007
- Article: 390
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Computational selection and prioritization of candidate genes for Fetal Alcohol Syndrome
Authors (first, second and last of 6)
- Zané Lombard
- Nicki Tiffin
- Michèle Ramsay
- Content type: Methodology article
- Open Access
- Published: 25 October 2007
- Article: 389
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EuCAP, a Eukaryotic Community Annotation Package, and its application to the rice genome
Authors (first, second and last of 5)
- Françoise Thibaud-Nissen
- Matthew Campbell
- C Robin Buell
- Content type: Software
- Open Access
- Published: 25 October 2007
- Article: 388
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BMDExpress: a software tool for the benchmark dose analyses of genomic data
Authors
- Longlong Yang
- Bruce C Allen
- Russell S Thomas
- Content type: Software
- Open Access
- Published: 25 October 2007
- Article: 387
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The complete mitochondrial genome of Pseudocellus pearsei (Chelicerata: Ricinulei) and a comparison of mitochondrial gene rearrangements in Arachnida
Authors (first, second and last of 4)
- Kathrin Fahrein
- Giovanni Talarico
- Lars Podsiadlowski
- Content type: Research article
- Open Access
- Published: 25 October 2007
- Article: 386
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Five distinct biological processes and 14 differentially expressed genes characterize TEL/AML1-positive leukemia
Authors (first, second and last of 15)
- Virginie Gandemer
- Anne-Gaëlle Rio
- Marie-Dominique Galibert
- Content type: Research article
- Open Access
- Published: 23 October 2007
- Article: 385
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A systems-biology analysis of isogenic megakaryocytic and granulocytic cultures identifies new molecular components of megakaryocytic apoptosis
Authors (first, second and last of 8)
- Chi Chen
- Peter G Fuhrken
- Eleftherios T Papoutsakis
- Content type: Research article
- Open Access
- Published: 22 October 2007
- Article: 384
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Genes involved in TGFβ1-driven epithelial-mesenchymal transition of renal epithelial cells are topologically related in the human interactome map
Authors (first, second and last of 9)
- Stefano Campanaro
- Simone Picelli
- Franca Anglani
- Content type: Research article
- Open Access
- Published: 22 October 2007
- Article: 383
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Normalization of array-CGH data: influence of copy number imbalances
Authors (first, second and last of 4)
- Johan Staaf
- Göran Jönsson
- Johan Vallon-Christersson
- Content type: Methodology article
- Open Access
- Published: 22 October 2007
- Article: 382