Volume 12, issue 1, December 2011
639 articles in this issue
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Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level
Authors (first, second and last of 7)
- Evy Battaglia
- Isabelle Benoit
- Ronald P de Vries
- Content type: Research article
- Open Access
- Published: 17 January 2011
- Article: 38
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The sex-biased brain: sexual dimorphism in gene expression in two species of songbirds
Authors (first, second and last of 5)
- Sara Naurin
- Bengt Hansson
- Staffan Bensch
- Content type: Research article
- Open Access
- Published: 14 January 2011
- Article: 37
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Global analysis of estrogen receptor beta binding to breast cancer cell genome reveals an extensive interplay with estrogen receptor alpha for target gene regulation
Authors (first, second and last of 15)
- Oli MV Grober
- Margherita Mutarelli
- Alessandro Weisz
- Content type: Research article
- Open Access
- Published: 14 January 2011
- Article: 36
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Full mitochondrial genome sequences of two endemic Philippine hornbill species (Aves: Bucerotidae) provide evidence for pervasive mitochondrial DNA recombination
Authors
- Svenja Sammler
- Christoph Bleidorn
- Ralph Tiedemann
- Content type: Research article
- Open Access
- Published: 14 January 2011
- Article: 35
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Divergent responses to peptidoglycans derived from different E. coli serotypes influence inflammatory outcome in trout, Oncorhynchus mykiss, macrophages
Authors (first, second and last of 5)
- Sebastian Boltaña
- Felipe Reyes-Lopez
- Simon A MacKenzie
- Content type: Research article
- Open Access
- Published: 14 January 2011
- Article: 34
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Recent and historical recombination in the admixed Norwegian Red cattle breed
Authors (first, second and last of 5)
- Marte Sodeland
- Matthew Kent
- Sigbjørn Lien
- Content type: Research article
- Open Access
- Published: 14 January 2011
- Article: 33
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Genomic fluidity: an integrative view of gene diversity within microbial populations
Authors (first, second and last of 4)
- Andrey O Kislyuk
- Bart Haegeman
- Joshua S Weitz
- Content type: Methodology article
- Open Access
- Published: 13 January 2011
- Article: 32
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Regulation and expression of sexual differentiation factors in embryonic and extragonadal tissues of Atlantic salmon
Authors (first, second and last of 11)
- Kristian R von Schalburg
- Motoshige Yasuike
- Ben F Koop
- Content type: Research article
- Open Access
- Published: 13 January 2011
- Article: 31
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De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum)
Authors (first, second and last of 7)
- Maria D Logacheva
- Artem S Kasianov
- Aleksey A Penin
- Content type: Research article
- Open Access
- Published: 13 January 2011
- Article: 30
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Gene expression profiling of rat spermatogonia and Sertoli cells reveals signaling pathways from stem cells to niche and testicular cancer cells to surrounding stroma
Authors (first, second and last of 8)
- Stephan Ryser
- Dominique Glauser
- Irmgard Irminger-Finger
- Content type: Research article
- Open Access
- Published: 13 January 2011
- Article: 29
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Identification of genes differentially expressed in a resistant reaction to Mycosphaerella pinodes in pea using microarray technology
Authors (first, second and last of 5)
- Sara Fondevilla
- Helge Küster
- Diego Rubiales
- Content type: Research article
- Open Access
- Published: 13 January 2011
- Article: 28
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A data mining approach for classifying DNA repair genes into ageing-related or non-ageing-related
Authors
- Alex A Freitas
- Olga Vasieva
- João Pedro de Magalhães
- Content type: Research article
- Open Access
- Published: 12 January 2011
- Article: 27
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Selenium toxicity but not deficient or super-nutritional selenium status vastly alters the transcriptome in rodents
Authors
- Anna M Raines
- Roger A Sunde
- Content type: Research article
- Open Access
- Published: 12 January 2011
- Article: 26
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Blueprint for a minimal photoautotrophic cell: conserved and variable genes in Synechococcus elongatus PCC 7942
Authors (first, second and last of 6)
- Luis Delaye
- Carmen M González-Domenech
- Andrés Moya
- Content type: Research article
- Open Access
- Published: 12 January 2011
- Article: 25
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The epigenetic regulator Histone Deacetylase 1 promotes transcription of a core neurogenic programme in zebrafish embryos
Authors (first, second and last of 4)
- Michael RM Harrison
- Aristophanes S Georgiou
- Vincent T Cunliffe
- Content type: Research article
- Open Access
- Published: 12 January 2011
- Article: 24
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Genome-wide patterns of promoter sharing and co-expression in bovine skeletal muscle
Authors (first, second and last of 5)
- Quan Gu
- Shivashankar H Nagaraj
- Antonio Reverter
- Content type: Research article
- Open Access
- Published: 12 January 2011
- Article: 23
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A systematic evaluation of expression of HERV-W elements; influence of genomic context, viral structure and orientation
Authors (first, second and last of 4)
- Fang Li
- Christoffer Nellåker
- HÃ¥kan Karlsson
- Content type: Research article
- Open Access
- Published: 12 January 2011
- Article: 22
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Bioinformatic evidence for a widely distributed, ribosomally produced electron carrier precursor, its maturation proteins, and its nicotinoprotein redox partners
Authors
- Daniel H Haft
- Content type: Research article
- Open Access
- Published: 11 January 2011
- Article: 21
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Global gene expression profile progression in Gaucher disease mouse models
Authors (first, second and last of 10)
- You-Hai Xu
- Li Jia
- Gregory A Grabowski
- Content type: Research article
- Open Access
- Published: 11 January 2011
- Article: 20
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Comprehensive prediction of chromosome dimer resolution sites in bacterial genomes
Authors
- Nobuaki Kono
- Kazuharu Arakawa
- Masaru Tomita
- Content type: Research article
- Open Access
- Published: 11 January 2011
- Article: 19
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Analysis of the unexplored features of rrs (16S rDNA) of the Genus Clostridium
Authors (first, second and last of 6)
- Vipin Chandra Kalia
- Tanmoy Mukherjee
- Nusrat Huma
- Content type: Research article
- Open Access
- Published: 11 January 2011
- Article: 18
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Complete genome sequencing and analysis of a Lancefield group G Streptococcus dysgalactiae subsp. equisimilis strain causing streptococcal toxic shock syndrome (STSS)
Authors (first, second and last of 7)
- Yumi Shimomura
- Kayo Okumura
- Tohru Miyoshi-Akiyama
- Content type: Research article
- Open Access
- Published: 11 January 2011
- Article: 17
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Erratum to: Identification and analysis of the germin-like gene family in soybean
Authors (first, second and last of 5)
- Mo Lu
- Ying-Peng Han
- Wen-Bin Li
- Content type: Erratum
- Open Access
- Published: 10 January 2011
- Article: 16
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Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between gossypium hirsutum and G. barbadense
Authors (first, second and last of 7)
- Yu Yu
- Daojun Yuan
- Xianlong Zhang
- Content type: Research article
- Open Access
- Published: 09 January 2011
- Article: 15
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Expression of G protein-coupled receptors and related proteins in HEK293, AtT20, BV2, and N18 cell lines as revealed by microarray analysis
Authors (first, second and last of 5)
- Brady K Atwood
- Jacqueline Lopez
- Alex Straiker
- Content type: Research article
- Open Access
- Published: 07 January 2011
- Article: 14
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ZNF280BY and ZNF280AY: autosome derived Y-chromosome gene families in Bovidae
Authors (first, second and last of 6)
- Yang Yang
- Ti-Cheng Chang
- Wan-Sheng Liu
- Content type: Research article
- Open Access
- Published: 07 January 2011
- Article: 13
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Mesenteric lymph node transcriptome profiles in BALB/c mice sensitized to three common food allergens
Authors
- Mainul Husain
- Herman J Boermans
- Niel A Karrow
- Content type: Research article
- Open Access
- Published: 06 January 2011
- Article: 12
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The SOX2 response program in glioblastoma multiforme: an integrated ChIP-seq, expression microarray, and microRNA analysis
Authors (first, second and last of 11)
- Xuefeng Fang
- Jae-Geun Yoon
- Biaoyang Lin
- Content type: Research article
- Open Access
- Published: 06 January 2011
- Article: 11
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Systematic evaluation of genome-wide methylated DNA enrichment using a CpG island array
Authors (first, second and last of 7)
- Liu Yang
- Kunlin Zhang
- Zhong Sheng Sun
- Content type: Research article
- Open Access
- Published: 06 January 2011
- Article: 10
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The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli
Authors (first, second and last of 7)
- Colin T Archer
- Jihyun F Kim
- Lars K Nielsen
- Content type: Research article
- Open Access
- Published: 06 January 2011
- Article: 9
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Genic SNP markers and legume synteny reveal candidate genes underlying QTL for Macrophomina phaseolina resistance and maturity in cowpea [Vigna unguiculata (L) Walp.]
Authors (first, second and last of 4)
- Wellington Muchero
- Jeffrey D Ehlers
- Philip A Roberts
- Content type: Research article
- Open Access
- Published: 05 January 2011
- Article: 8
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Association genetics in Solanum tuberosum provides new insights into potato tuber bruising and enzymatic tissue discoloration
Authors (first, second and last of 13)
- Claude Urbany
- Benjamin Stich
- Christiane Gebhardt
- Content type: Research article
- Open Access
- Published: 05 January 2011
- Article: 7
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An iterative workflow for mining the human intestinal metaproteome
Authors (first, second and last of 10)
- Koos Rooijers
- Carolin Kolmeder
- Peter J Schaap
- Content type: Research article
- Open Access
- Published: 05 January 2011
- Article: 6
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The 'PUCE CAFE' Project: the First 15K Coffee Microarray, a New Tool for Discovering Candidate Genes correlated to Agronomic and Quality Traits
Authors (first, second and last of 18)
- Isabelle Privat
- Amélie Bardil
- Benoit Bertrand
- Content type: Methodology article
- Open Access
- Published: 05 January 2011
- Article: 5
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Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley
Authors (first, second and last of 8)
- Yada Chutimanitsakun
- Rick W Nipper
- Patrick M Hayes
- Content type: Research article
- Open Access
- Published: 04 January 2011
- Article: 4
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Comprehensive profiling of zebrafish hepatic proximal promoter CpG island methylation and its modification during chemical carcinogenesis
Authors (first, second and last of 5)
- Leda Mirbahai
- Timothy D Williams
- J Kevin Chipman
- Content type: Research article
- Open Access
- Published: 04 January 2011
- Article: 3
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Time-series clustering of gene expression in irradiated and bystander fibroblasts: an application of FBPA clustering
Authors (first, second and last of 4)
- Shanaz A Ghandhi
- Anshu Sinha
- Sally A Amundson
- Content type: Research article
- Open Access
- Published: 04 January 2011
- Article: 2
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Venom gland transcriptomes of two elapid snakes (Bungarus multicinctus and Naja atra) and evolution of toxin genes
Authors (first, second and last of 8)
- Yu Jiang
- Yan Li
- Wen Wang
- Content type: Research article
- Open Access
- Published: 03 January 2011
- Article: 1