Volume 4, issue 1, December 2003
53 articles in this issue
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Genomic characterization of a repetitive motif strongly associated with developmental genes in Drosophila
Authors (first, second and last of 4)
- Javier Costas
- Cristina P Vieira
- Jorge Vieira
- Content type: Research article
- Open Access
- Published: 16 December 2003
- Article: 52
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Metabolic reconstruction of sulfur assimilation in the extremophile Acidithiobacillus ferrooxidans based on genome analysis
Authors (first, second and last of 4)
- Jorge Valdés
- Felipe Veloso
- David Holmes
- Content type: Research article
- Open Access
- Published: 15 December 2003
- Article: 51
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The WD-repeat protein superfamily in Arabidopsis: conservation and divergence in structure and function
Authors
- Steven van Nocker
- Philip Ludwig
- Content type: Research article
- Open Access
- Published: 12 December 2003
- Article: 50
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Relationship between gene co-expression and probe localization on microarray slides
Authors (first, second and last of 4)
- Yuval Kluger
- Haiyuan Yu
- Mark Gerstein
- Content type: Research article
- Open Access
- Published: 10 December 2003
- Article: 49
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Phylogenomic identification of five new human homologs of the DNA repair enzyme AlkB
Authors (first, second and last of 4)
- Michal A Kurowski
- Ashok S Bhagwat
- Janusz M Bujnicki
- Content type: Research article
- Open Access
- Published: 10 December 2003
- Article: 48
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Identification and phylogenetic analysis of Dictyostelium discoideum kinesin proteins
Authors
- Martin Kollmar
- Gernot Glöckner
- Content type: Research article
- Open Access
- Published: 27 November 2003
- Article: 47
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Microarray analysis of tumor necrosis factor α induced gene expression in U373 human glioblastoma cells
Authors (first, second and last of 10)
- Jens Schwamborn
- Antje Lindecke
- Christian Kaltschmidt
- Content type: Research article
- Open Access
- Published: 25 November 2003
- Article: 46
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In silico and in vivo analysis reveal a novel gene in Saccharomyces cerevisiae trehalose metabolism
Authors
- Joelma F De Mesquita
- Anita D Panek
- Pedro S de Araujo
- Content type: Research article
- Open Access
- Published: 13 November 2003
- Article: 45
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Amplified RNA degradation in T7-amplification methods results in biased microarray hybridizations
Authors
- Andrej-Nikolai Spiess
- Nadine Mueller
- Richard Ivell
- Content type: Methodology article
- Open Access
- Published: 10 November 2003
- Article: 44
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Expression of alternatively spliced isoforms of human Sp7 in osteoblast-like cells
Authors
- Maria-athina Milona
- Julie E Gough
- Alasdair J Edgar
- Content type: Research article
- Open Access
- Published: 07 November 2003
- Article: 43
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PCAS – a precomputed proteome annotation database resource
Authors (first, second and last of 7)
- Yong Zhang
- Yanbin Yin
- Ying Jiang
- Content type: Database
- Open Access
- Published: 01 November 2003
- Article: 42
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Multifactorial experimental design and the transitivity of ratios with spotted DNA microarrays
Authors
- Jeffrey P Townsend
- Content type: Methodology article
- Open Access
- Published: 02 October 2003
- Article: 41
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Differential representation of sunflower ESTs in enriched organ-specific cDNA libraries in a small scale sequencing project
Authors (first, second and last of 5)
- Paula Fernández
- Norma Paniego
- Ruth A Heinz
- Content type: Research article
- Open Access
- Published: 30 September 2003
- Article: 40
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The interrelationship between DRIM gene expression and cytogenetic and phenotypic characteristics in human breast tumor cell lines
Authors (first, second and last of 4)
- Steve Goodison
- Carrie Viars
- Virginia Urquidi
- Content type: Research article
- Open Access
- Published: 22 September 2003
- Article: 39
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A novel design of whole-genome microarray probes for Saccharomyces cerevisiae which minimizes cross-hybridization
Authors (first, second and last of 4)
- Emmanuel Talla
- Fredj Tekaia
- Bernard Dujon
- Content type: Research article
- Open Access
- Published: 22 September 2003
- Article: 38
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An improved probability mapping approach to assess genome mosaicism
Authors
- Olga Zhaxybayeva
- J Peter Gogarten
- Content type: Methodology article
- Open Access
- Published: 15 September 2003
- Article: 37
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Increased retention of functional fusions to toxic genes in new two-hybrid libraries of the E. coli strain MG1655 and B. subtilis strain 168 genomes, prepared without passaging through E. coli
Authors (first, second and last of 6)
- Steven A Haney
- David Keeney
- Beth Rasmussen
- Content type: Methodology article
- Open Access
- Published: 10 September 2003
- Article: 36
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The Anopheles gambiae glutathione transferase supergene family: annotation, phylogeny and expression profiles
Authors (first, second and last of 5)
- Yunchuan Ding
- Federica Ortelli
- Hilary Ranson
- Content type: Research article
- Open Access
- Published: 13 August 2003
- Article: 35
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Application of comparative genomics in the identification and analysis of novel families of membrane-associated receptors in bacteria
Authors
- Vivek Anantharaman
- L Aravind
- Content type: Research article
- Open Access
- Published: 12 August 2003
- Article: 34
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Identification of a novel Drosophila gene, beltless, using injectable embryonic and adult RNA interference (RNAi)
Authors
- Svetlana Dzitoyeva
- Nikola Dimitrijevic
- Hari Manev
- Content type: Research article
- Open Access
- Published: 12 August 2003
- Article: 33
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Molecular cloning, genomic characterization and over-expression of a novel gene, XRRA1, identified from human colorectal cancer cell HCT116Clone2_XRR and macaque testis
Authors (first, second and last of 5)
- Felix M Mesak
- Naoki Osada
- Cheng E Ng
- Content type: Research article
- Open Access
- Published: 09 August 2003
- Article: 32
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Congruence of tissue expression profiles from Gene Expression Atlas, SAGEmap and TissueInfo databases
Authors
- Lukasz Huminiecki
- Andrew T Lloyd
- Kenneth H Wolfe
- Content type: Methodology article
- Open Access
- Published: 29 July 2003
- Article: 31
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Analysis of the conservation of synteny between Fugu and human chromosome 12
Authors (first, second and last of 5)
- Alexandre Montpetit
- Michael D Wilson
- Daniel Sinnett
- Content type: Research article
- Open Access
- Published: 23 July 2003
- Article: 30
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Comparative genomic analysis reveals independent expansion of a lineage-specific gene family in vertebrates: The class II cytokine receptors and their ligands in mammals and fish
Authors (first, second and last of 6)
- Georges Lutfalla
- Hugues Roest Crollius
- Danièle Monneron
- Content type: Research article
- Open Access
- Published: 17 July 2003
- Article: 29
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Sensitivity and fidelity of DNA microarray improved with integration of Amplified Differential Gene Expression (ADGE)
Authors (first, second and last of 5)
- Zhijian J Chen
- Laurent Gaté
- Kenneth D Tew
- Content type: Methodology article
- Open Access
- Published: 14 July 2003
- Article: 28
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Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data
Authors (first, second and last of 9)
- Rachel Lyne
- Gavin Burns
- Jürg Bähler
- Content type: Research article
- Open Access
- Published: 10 July 2003
- Article: 27
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Identification of nutrient partitioning genes participating in rice grain filling by singular value decomposition (SVD) of genome expression data
Authors (first, second and last of 4)
- Abraham Anderson
- Matthew Hudson
- Tong Zhu
- Content type: Research article
- Open Access
- Published: 10 July 2003
- Article: 26
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A transcription map of the 6p22.3 reading disability locus identifying candidate genes
Authors
- Eric R Londin
- Haiying Meng
- Jeffrey R Gruen
- Content type: Research article
- Open Access
- Published: 30 June 2003
- Article: 25
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TMC and EVER genes belong to a larger novel family, the TMC gene family encoding transmembrane proteins
Authors
- Gabor Keresztes
- Hideki Mutai
- Stefan Heller
- Content type: Research article
- Open Access
- Published: 17 June 2003
- Article: 24
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The construction and use of bacterial DNA microarrays based on an optimized two-stage PCR strategy
Authors (first, second and last of 13)
- Bradley L Postier
- Hong-Liang Wang
- Robert L Burnap
- Content type: Methodology article
- Open Access
- Published: 12 June 2003
- Article: 23
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Gene discovery in the hamster: a comparative genomics approach for gene annotation by sequencing of hamster testis cDNAs
Authors (first, second and last of 6)
- Sreedhar Oduru
- Janee L Campbell
- Simon C Williams
- Content type: Research article
- Open Access
- Published: 03 June 2003
- Article: 22
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High accuracy genotyping directly from genomic DNA using a rolling circle amplification based assay
Authors (first, second and last of 15)
- Osama A Alsmadi
- Carole J Bornarth
- Mark D Driscoll
- Content type: Methodology article
- Open Access
- Published: 30 May 2003
- Article: 21
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A high resolution physical and RH map of pig chromosome 6q1.2 and comparative analysis with human chromosome 19q13.1
Authors (first, second and last of 8)
- Flávia Martins-Wess
- Denis Milan
- Tosso Leeb
- Content type: Research article
- Open Access
- Published: 13 May 2003
- Article: 20
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Development and validation of a T7 based linear amplification for genomic DNA
Authors
- Chih Long Liu
- Stuart L Schreiber
- Bradley E Bernstein
- Content type: Methodology article
- Open Access
- Published: 09 May 2003
- Article: 19
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The gene structure and expression of human ABHD1: overlapping polyadenylation signal sequence with Sec12
Authors
- Alasdair J Edgar
- Content type: Research article
- Open Access
- Published: 07 May 2003
- Article: 18
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Wavelet to predict bacterial ori and ter: a tendency towards a physical balance
Authors
- Jiuzhou Song
- Antony Ware
- Shu-Lin Liu
- Content type: Research article
- Open Access
- Published: 05 May 2003
- Article: 17
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A general cloning system to selectively isolate any eukaryotic or prokaryotic genomic region in yeast
Authors (first, second and last of 6)
- Vladimir N Noskov
- Natalay Kouprina
- Vladimir Larionov
- Content type: Methodology article
- Open Access
- Published: 29 April 2003
- Article: 16
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Partial duplication of the APBA2 gene in chromosome 15q13 corresponds to duplicon structures
Authors (first, second and last of 5)
- James S Sutcliffe
- Michael K Han
- Erika L Nurmi
- Content type: Research article
- Open Access
- Published: 29 April 2003
- Article: 15
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Unusual misregulation of RNA splicing caused by insertion of a transposable element into the T (Brachyury) locus
Authors
- Sarah N Goldin
- Virginia E Papaioannou
- Content type: Research article
- Open Access
- Published: 17 April 2003
- Article: 14
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TOX defines a conserved subfamily of HMG-box proteins
Authors
- Emmett O'Flaherty
- Jonathan Kaye
- Content type: Research article
- Open Access
- Published: 02 April 2003
- Article: 13
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Analysis of two large functionally uncharacterized regions in the Methanopyrus kandleri AV19 genome
Authors (first, second and last of 8)
- Lars Juhl Jensen
- Marie Skovgaard
- David Ussery
- Content type: Research article
- Open Access
- Published: 02 April 2003
- Article: 12
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Effects of mRNA amplification on gene expression ratios in cDNA experiments estimated by analysis of variance
Authors (first, second and last of 10)
- Vigdis Nygaard
- Anders Løland
- Birgitte Smith-Sørensen
- Content type: Research article
- Open Access
- Published: 23 March 2003
- Article: 11
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Simple sequence repeats and compositional bias in the bipartite Ralstonia solanacearum GMI1000 genome
Authors
- Tom Coenye
- Peter Vandamme
- Content type: Research article
- Open Access
- Published: 17 March 2003
- Article: 10
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Refined physical map of the human PAX2/HOX11/NFKB2 cancer gene region at 10q24 and relocalization of the HPV6AI1 viral integration site to 14q13.3-q21.1
Authors (first, second and last of 8)
- Sheryl M Gough
- Margaret McDonald
- Christine M Morris
- Content type: Research article
- Open Access
- Published: 03 March 2003
- Article: 9
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Development of a porcine skeletal muscle cDNA microarray: analysis of differential transcript expression in phenotypically distinct muscles
Authors (first, second and last of 7)
- Qianfan Bai
- Christine McGillivray
- Kin-Chow Chang
- Content type: Research article
- Open Access
- Published: 01 March 2003
- Article: 8
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Sequence determinants in human polyadenylation site selection
Authors
- Matthieu Legendre
- Daniel Gautheret
- Content type: Research article
- Open Access
- Published: 25 February 2003
- Article: 7
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STRP Screening Sets for the human genome at 5 cM density
Authors (first, second and last of 6)
- Nader Ghebranious
- David Vaske
- James L Weber
- Content type: Research article
- Open Access
- Published: 24 February 2003
- Article: 6
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Ancient conserved domains shared by animal soluble guanylyl cyclases and bacterial signaling proteins
Authors
- Lakshminarayan M Iyer
- Vivek Anantharaman
- L Aravind
- Content type: Research article
- Open Access
- Published: 03 February 2003
- Article: 5
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Reproducibility of oligonucleotide arrays using small samples
Authors (first, second and last of 5)
- Jeanette N McClintick
- Ronald E Jerome
- Howard J Edenberg
- Content type: Research article
- Open Access
- Published: 30 January 2003
- Article: 4