Volume 16, supplement issue 7, December 2015
Selected articles from the International Conference on Intelligent Biology and Medicine (ICIBM) 2014: Genomics
- Issue editors
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- Jianhua Ruan
- Zhongming Zhao
- Victor X. Jin
- Yufei Huang
- Hua Xu
- Jeremy Edwards
- Yidong Chen
19 articles in this issue
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Multiple signatures of a disease in potential biomarker space: Getting the signatures consensus and identification of novel biomarkers
Authors
- Ghim Siong Ow
- Vladimir A Kuznetsov
- Content type: Research
- Open Access
- Published: 11 June 2015
- Article: S2
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Discovery and characterization of long intergenic non-coding RNAs (lincRNA) module biomarkers in prostate cancer: an integrative analysis of RNA-Seq data
Authors (first, second and last of 8)
- Weirong Cui
- Yulan Qian
- Bairong Shen
- Content type: Research
- Open Access
- Published: 11 June 2015
- Article: S3
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A genome-wide systems analysis reveals strong link between colorectal cancer and trimethylamine N-oxide (TMAO), a gut microbial metabolite of dietary meat and fat
Authors
- Rong Xu
- QuanQiu Wang
- Li Li
- Content type: Research
- Open Access
- Published: 11 June 2015
- Article: S4
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Dysregulated transcription across diverse cancer types reveals the importance of RNA-binding protein in carcinogenesis
Authors
- Jing Wang
- Qi Liu
- Yu Shyr
- Content type: Research
- Open Access
- Published: 11 June 2015
- Article: S5
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A computational method for clinically relevant cancer stratification and driver mutation module discovery using personal genomics profiles
Authors (first, second and last of 4)
- Lin Wang
- Fuhai Li
- Stephen TC Wong
- Content type: Research
- Open Access
- Published: 11 June 2015
- Article: S6
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Network-based stratification analysis of 13 major cancer types using mutations in panels of cancer genes
Authors (first, second and last of 5)
- Xue Zhong
- Hushan Yang
- Bingshan Li
- Content type: Research
- Open Access
- Published: 11 June 2015
- Article: S7
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Oncogenes and tumor suppressor genes: comparative genomics and network perspectives
Authors (first, second and last of 7)
- Kevin Zhu
- Qi Liu
- Hua Xu
- Content type: Research
- Open Access
- Published: 11 June 2015
- Article: S8
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Network-based gene prediction for Plasmodium falciparum malaria towards genetics-based drug discovery
Authors
- Yang Chen
- Rong Xu
- Content type: Research
- Open Access
- Published: 11 June 2015
- Article: S9
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BMRF-MI: integrative identification of protein interaction network by modeling the gene dependency
Authors (first, second and last of 6)
- Xu Shi
- Xiao Wang
- Jianhua Xuan
- Content type: Research
- Open Access
- Published: 11 June 2015
- Article: S10
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Prediction of promoters and enhancers using multiple DNA methylation-associated features
Authors (first, second and last of 5)
- Woochang Hwang
- Verity F Oliver
- Jiang Qian
- Content type: Research
- Open Access
- Published: 11 June 2015
- Article: S11
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Comprehensive genome-wide transcription factor analysis reveals that a combination of high affinity and low affinity DNA binding is needed for human gene regulation
Authors (first, second and last of 4)
- Junbai Wang
- Agnieszka Malecka
- Jan Delabie
- Content type: Research
- Open Access
- Published: 11 June 2015
- Article: S12
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MOST+: A de novo motif finding approach combining genomic sequence and heterogeneous genome-wide signatures
Authors (first, second and last of 4)
- Yizhe Zhang
- Yupeng He
- Chaochun Wei
- Content type: Research
- Open Access
- Published: 11 June 2015
- Article: S13
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Differential expression analysis of RNA sequencing data by incorporating non-exonic mapped reads
Authors (first, second and last of 7)
- Hung-I Harry Chen
- Yuanhang Liu
- Yidong Chen
- Content type: Research
- Open Access
- Published: 11 June 2015
- Article: S14
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Global transcriptome analysis profiles metabolic pathways in traditional herb Astragalus membranaceus Bge. var. mongolicus (Bge.) Hsiao
Authors (first, second and last of 8)
- Jing Chen
- Xue-Ting Wu
- Peng Nan
- Content type: Research
- Open Access
- Published: 11 June 2015
- Article: S15
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Application of a hierarchical enzyme classification method reveals the role of gut microbiome in human metabolism
Authors
- Akram Mohammed
- Chittibabu Guda
- Content type: Research
- Open Access
- Published: 11 June 2015
- Article: S16
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A translational bioinformatic approach in identifying and validating an interaction between Vitamin A and CYP19A1
Authors (first, second and last of 5)
- Santosh Philips
- Jing Zhou
- Lang Li
- Content type: Research
- Open Access
- Published: 11 June 2015
- Article: S17
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Systems analysis of gene ontology and biological pathways involved in post-myocardial infarction responses
Authors
- Nguyen T Nguyen
- Merry L Lindsey
- Yu-Fang Jin
- Content type: Research
- Open Access
- Published: 11 June 2015
- Article: S18
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Co-modulation analysis of gene regulation in breast cancer reveals complex interplay between ESR1 and ERBB2 genes
Authors (first, second and last of 7)
- Yu-Chiao Chiu
- Chin-Ting Wu
- Eric Y Chuang
- Content type: Research
- Open Access
- Published: 11 June 2015
- Article: S19