Volume 14, issue 1, December 2013
933 articles in this issue
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A reference consensus genetic map for molecular markers and economically important traits in faba bean (Vicia fabaL.)
Authors (first, second and last of 12)
- Zlatko Satovic
- Carmen M Avila
- Ana M Torres
- Content type: Research article
- Open Access
- Published: 30 December 2013
- Article: 932
This is part of 1 collection: -
Identification and characterisation of non-coding small RNAs in the pathogenic filamentous fungus Trichophyton rubrum
Authors (first, second and last of 9)
- Tao Liu
- Xianwen Ren
- Qi Jin
- Content type: Research article
- Open Access
- Published: 30 December 2013
- Article: 931
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RETRACTED ARTICLE: Gene expression analysis indicates CB1 receptor upregulation in the hippocampus and neurotoxic effects in the frontal cortex 3 weeks after single-dose MDMA administration in Dark Agouti rats
Authors (first, second and last of 7)
- Peter Petschner
- Viola Tamasi
- Gyorgy Bagdy
- Content type: Research article
- Open Access
- Published: 30 December 2013
- Article: 930
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Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish
Authors (first, second and last of 10)
- Ruijia Wang
- Luyang Sun
- Zhanjiang Liu
- Content type: Methodology article
- Open Access
- Published: 30 December 2013
- Article: 929
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The fungal symbiont of Acromyrmex leaf-cutting ants expresses the full spectrum of genes to degrade cellulose and other plant cell wall polysaccharides
Authors (first, second and last of 6)
- Morten N Grell
- Tore Linde
- Lene Lange
- Content type: Research article
- Open Access
- Published: 28 December 2013
- Article: 928
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Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin
Authors (first, second and last of 10)
- Minou Bina
- Phillip Wyss
- Daidong Wang
- Content type: Research article
- Open Access
- Published: 28 December 2013
- Article: 927
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Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production
Authors (first, second and last of 12)
- Christian Bogen
- Arwa Al-Dilaimi
- Olaf Kruse
- Content type: Research article
- Open Access
- Published: 28 December 2013
- Article: 926
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Comparison of transcription of the Haemophilus influenzae iron/heme modulon genes in vitro and in vivo in the chinchilla middle ear
Authors (first, second and last of 5)
- Paul W Whitby
- Timothy M VanWagoner
- Terrence L Stull
- Content type: Research article
- Open Access
- Published: 27 December 2013
- Article: 925
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PSP: rapid identification of orthologous coding genes under positive selection across multiple closely related prokaryotic genomes
Authors (first, second and last of 5)
- Fei Su
- Hong-Yu Ou
- Ping Xu
- Content type: Software
- Open Access
- Published: 27 December 2013
- Article: 924
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The genome of Romanomermis culicivorax: revealing fundamental changes in the core developmental genetic toolkit in Nematoda
Authors (first, second and last of 16)
- Philipp H Schiffer
- Michael Kroiher
- Einhard Schierenberg
- Content type: Research article
- Open Access
- Published: 27 December 2013
- Article: 923
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TIPMaP: a web server to establish transcript isoform profiles from reliable microarray probes
Authors (first, second and last of 6)
- Neelima Chitturi
- Govindkumar Balagannavar
- Kshitish K Acharya
- Content type: Software
- Open Access
- Published: 27 December 2013
- Article: 922
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Male infertility and copy number variants (CNVs) in the dog: a two-pronged approach using Computer Assisted Sperm Analysis (CASA) and Fluorescent In Situ Hybridization (FISH)
Authors (first, second and last of 8)
- Daniele Cassatella
- Nicola Antonio Martino
- Mario Ventura
- Content type: Research article
- Open Access
- Published: 27 December 2013
- Article: 921
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Transcriptomic and genomic evidence for Streptococcus agalactiae adaptation to the bovine environment
Authors (first, second and last of 5)
- Vincent P Richards
- Sang Chul Choi
- Michael J Stanhope
- Content type: Research article
- Open Access
- Published: 27 December 2013
- Article: 920
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Proteomic changes in the base of chrysanthemum cuttings during adventitious root formation
Authors (first, second and last of 12)
- Ruixia Liu
- Sumei Chen
- Fadi Chen
- Content type: Research article
- Open Access
- Published: 26 December 2013
- Article: 919
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POMO - Plotting Omics analysis results for Multiple Organisms
Authors (first, second and last of 8)
- Jake Lin
- Richard Kreisberg
- Reija Autio
- Content type: Software
- Open Access
- Published: 24 December 2013
- Article: 918
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Comparative analysis of genome sequences from four strains of the Buchnera aphidicola Mp endosymbion of the green peach aphid, Myzus persicae
Authors (first, second and last of 7)
- Zhijie Jiang
- Derek H Jones
- Alex C C Wilson
- Content type: Research article
- Open Access
- Published: 24 December 2013
- Article: 917
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Comparative inner ear transcriptome analysis between the Rickett’s big-footed bats (Myotis ricketti) and the greater short-nosed fruit bats (Cynopterus sphinx)
Authors (first, second and last of 4)
- Dong Dong
- Ming Lei
- Shuyi Zhang
- Content type: Research article
- Open Access
- Published: 23 December 2013
- Article: 916
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Transcriptome-wide profiling and expression analysis of transcription factor families in a liverwort, Marchantia polymorpha
Authors
- Niharika Sharma
- Prem L Bhalla
- Mohan B Singh
- Content type: Research article
- Open Access
- Published: 23 December 2013
- Article: 915
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Divergent transcription is associated with promoters of transcriptional regulators
Authors (first, second and last of 19)
- Cyrille Lepoivre
- Mohamed Belhocine
- Salvatore Spicuglia
- Content type: Research article
- Open Access
- Published: 23 December 2013
- Article: 914
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Microbial genomic taxonomy
Authors (first, second and last of 6)
- Cristiane C Thompson
- Luciane Chimetto
- Fabiano L Thompson
- Content type: Commentary
- Open Access
- Published: 23 December 2013
- Article: 913
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The nucleosome regulates the usage of polyadenylation sites in the human genome
Authors (first, second and last of 4)
- Huan Huang
- Jiao Chen
- Xiao Sun
- Content type: Research article
- Open Access
- Published: 23 December 2013
- Article: 912
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A unique in vivo experimental approach reveals metabolic adaptation of the probiotic Propionibacterium freudenreichii to the colon environment
Authors (first, second and last of 9)
- Taous Saraoui
- Sandrine Parayre
- Hélène Falentin
- Content type: Research article
- Open Access
- Published: 23 December 2013
- Article: 911
This is part of 1 collection: -
A new computational strategy for predicting essential genes
Authors (first, second and last of 7)
- Jian Cheng
- Wenwu Wu
- Shiheng Tao
- Content type: Methodology article
- Open Access
- Published: 21 December 2013
- Article: 910
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Uncovering the genetic basis for early isogamete differentiation: a case study of Ectocarpus siliculosus
Authors (first, second and last of 4)
- Agnieszka P Lipinska
- Sofie D’hondt
- Olivier De Clerck
- Content type: Research article
- Open Access
- Published: 21 December 2013
- Article: 909
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A genome-wide scan for signatures of differential artificial selection in ten cattle breeds
Authors (first, second and last of 4)
- Sophie Rothammer
- Doris Seichter
- Ivica Medugorac
- Content type: Research article
- Open Access
- Published: 21 December 2013
- Article: 908
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Association of microsatellite pairs with segmental duplications in insect genomes
Authors
- Susanta K Behura
- David W Severson
- Content type: Research article
- Open Access
- Published: 21 December 2013
- Article: 907
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The neuropeptide complement of the marine annelid Platynereis dumerilii
Authors (first, second and last of 6)
- Markus Conzelmann
- Elizabeth A Williams
- Gáspár Jékely
- Content type: Research article
- Open Access
- Published: 20 December 2013
- Article: 906
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Quantitative and qualitative differences in celiac disease epitopes among durum wheat varieties identified through deep RNA-amplicon sequencing
Authors (first, second and last of 6)
- Elma MJ Salentijn
- Danny G Esselink
- Marinus JM Smulders
- Content type: Research article
- Open Access
- Published: 19 December 2013
- Article: 905
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An overview of gene expression dynamics during early ovarian folliculogenesis: specificity of follicular compartments and bi-directional dialog
Authors (first, second and last of 9)
- Agnes Bonnet
- Cedric Cabau
- Beatrice Mandon-Pepin
- Content type: Research article
- Open Access
- Published: 19 December 2013
- Article: 904
This is part of 1 collection: -
Biased gene expression in early honeybee larval development
Authors
- Rosannah C Cameron
- Elizabeth J Duncan
- Peter K Dearden
- Content type: Research article
- Open Access
- Published: 19 December 2013
- Article: 903
This is part of 1 collection: -
Rapid genomic and transcriptomic alterations induced by wide hybridization: Chrysanthemum nankingense × Tanacetum vulgare and C. crassum × Crossostephium chinense (Asteraceae)
Authors (first, second and last of 7)
- Haibin Wang
- Jiafu Jiang
- Fadi Chen
- Content type: Research article
- Open Access
- Published: 18 December 2013
- Article: 902
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The drug:H+ antiporters of family 2 (DHA2), siderophore transporters (ARN) and glutathione:H+antiporters (GEX) have a common evolutionary origin in hemiascomycete yeasts
Authors
- Paulo Jorge Dias
- Isabel Sá-Correia
- Content type: Research article
- Open Access
- Published: 18 December 2013
- Article: 901
This is part of 1 collection: -
Comparison of upstream regulators in human ex vivo cultured cornea limbal epithelial stem cells and differentiated corneal epithelial cells
Authors (first, second and last of 7)
- Zoltán Veréb
- Réka Albert
- Goran Petrovski
- Content type: Research article
- Open Access
- Published: 17 December 2013
- Article: 900
This is part of 1 collection: -
Sequence and gene content of a large fragment of a lizard sex chromosome and evaluation of candidate sex differentiating gene R-spondin 1
Authors (first, second and last of 13)
- Tariq Ezaz
- Bhumika Azad
- Stephen D Sarre
- Content type: Research article
- Open Access
- Published: 17 December 2013
- Article: 899
This is part of 1 collection: -
Epigenetic regulation of MDR1 gene through post-translational histone modifications in prostate cancer
Authors (first, second and last of 8)
- Rui Henrique
- Ana Isabel Oliveira
- Carmen Jerónimo
- Content type: Research article
- Open Access
- Published: 17 December 2013
- Article: 898
This is part of 1 collection: -
Genome wide association studies for body conformation traits in the Chinese Holstein cattle population
Authors (first, second and last of 13)
- Xiaoping Wu
- Ming Fang
- Dongxiao Sun
- Content type: Research article
- Open Access
- Published: 17 December 2013
- Article: 897
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Assessment of hematopoietic failure due to Rpl11 deficiency in a zebrafish model of Diamond-Blackfan anemia by deep sequencing
Authors (first, second and last of 11)
- Zhaojun Zhang
- Haibo Jia
- Xiangdong Fang
- Content type: Research article
- Open Access
- Published: 17 December 2013
- Article: 896
This is part of 1 collection: -
Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation
Authors (first, second and last of 12)
- Adam B Olson
- Heather Kent
- Cindi R Corbett
- Content type: Research article
- Open Access
- Published: 17 December 2013
- Article: 895
This is part of 1 collection: -
The peripheral blood transcriptome reflects variations in immunity traits in swine: towards the identification of biomarkers
Authors (first, second and last of 7)
- Núria Mach
- Yu Gao
- Claire Rogel-Gaillard
- Content type: Research article
- Open Access
- Published: 17 December 2013
- Article: 894
This is part of 1 collection: -
OnPLS integration of transcriptomic, proteomic and metabolomic data shows multi-level oxidative stress responses in the cambium of transgenic hipI- superoxide dismutase Populus plants
Authors (first, second and last of 17)
- Vaibhav Srivastava
- Ogonna Obudulu
- Gunnar Wingsle
- Content type: Research article
- Open Access
- Published: 17 December 2013
- Article: 893
This is part of 1 collection: -
RNA-Seq optimization with eQTL gold standards
Authors (first, second and last of 6)
- Shannon E Ellis
- Simone Gupta
- Dan E Arking
- Content type: Methodology article
- Open Access
- Published: 17 December 2013
- Article: 892
This is part of 1 collection: -
The early phase transcriptome of bovine monocyte-derived macrophages infected with Staphylococcus aureus in vitro
Authors (first, second and last of 6)
- Anna Monika Lewandowska-Sabat
- Guro Margrethe Boman
- Ingrid Olsaker
- Content type: Research article
- Open Access
- Published: 17 December 2013
- Article: 891
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Rough colony morphology of Mycobacterium massiliense Type II genotype is due to the deletion of glycopeptidolipid locus within its genome
Authors (first, second and last of 5)
- Byoung-Jun Kim
- Bo-Ram Kim
- Bum-Joon Kim
- Content type: Research article
- Open Access
- Published: 17 December 2013
- Article: 890
This is part of 1 collection: -
Functional analyses of cotton (Gossypium hirsutum L.) immature fiber (im) mutant infer that fiber cell wall development is associated with stress responses
Authors (first, second and last of 5)
- Hee Jin Kim
- Yuhong Tang
- David D Fang
- Content type: Research article
- Open Access
- Published: 17 December 2013
- Article: 889
This is part of 1 collection: -
Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique
Authors (first, second and last of 4)
- Katharina Pfeifer-Sancar
- Almut Mentz
- Jörn Kalinowski
- Content type: Research article
- Open Access
- Published: 17 December 2013
- Article: 888
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Genome comparison of two Magnaporthe oryzae field isolates reveals genome variations and potential virulence effectors
Authors (first, second and last of 13)
- Chenxi Chen
- Bi Lian
- Thomas K Mitchell
- Content type: Research article
- Open Access
- Published: 16 December 2013
- Article: 887
This is part of 1 collection: -
Rapid microsatellite development for tree peony and its implications
Authors (first, second and last of 6)
- Zhimin Gao
- Jie Wu
- Qingyan Shu
- Content type: Research article
- Open Access
- Published: 16 December 2013
- Article: 886
This is part of 1 collection: -
Characterization of cytokinin signaling and homeostasis gene families in two hardwood tree species: Populus trichocarpa and Prunus persica
Authors (first, second and last of 9)
- Juha Immanen
- Kaisa Nieminen
- Ykä Helariutta
- Content type: Research article
- Open Access
- Published: 16 December 2013
- Article: 885
This is part of 1 collection: -
Transcriptome analysis of Pinus monticola primary needles by RNA-seq provides novel insight into host resistance to Cronartium ribicola
Authors
- Jun-Jun Liu
- Rona N Sturrock
- Ross Benton
- Content type: Research article
- Open Access
- Published: 16 December 2013
- Article: 884
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