Volume 10, supplement issue 3, December 2009
Eighth International Conference on Bioinformatics (InCoB2009):Computational Biology
- Issue editors
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- Shoba Ranganathan
- Frank Eisenhaber
- Joo Chuan Tong
- Tin Wee Tan
36 articles in this issue
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BOAT: Basic Oligonucleotide Alignment Tool
Authors (first, second and last of 7)
- Shu-Qi Zhao
- Jun Wang
- Liping Wei
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S2
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An empirical study of choosing efficient discriminative seeds for oligonucleotide design
Authors
- Won-Hyoung Chung
- Seong-Bae Park
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S3
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RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation
Authors (first, second and last of 8)
- Jittima Piriyapongsa
- Chumpol Ngamphiw
- Sissades Tongsima
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S4
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Computational identification and experimental validation of PPRE motifs in NHE1 and MnSOD genes of Human
Authors (first, second and last of 6)
- Gireedhar Venkatachalam
- Alan Prem Kumar
- Meena Kishore Sakharkar
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S5
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A multi-factor model for caspase degradome prediction
Authors (first, second and last of 4)
- Lawrence JK Wee
- Joo Chuan Tong
- Shoba Ranganathan
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S6
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Development of a database system for mapping insertional mutations onto the mouse genome with large-scale experimental data
Authors (first, second and last of 9)
- Wenwei Yang
- Ke Jin
- Ling V Sun
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S7
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BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources
Authors (first, second and last of 8)
- Jeongheui Lim
- Sang-Yoon Kim
- Jong Bhak
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S8
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TTS Mapping: integrative WEB tool for analysis of triplex formation target DNA Sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome
Authors
- Piroon Jenjaroenpun
- Vladimir A Kuznetsov
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S9
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The oligonucleotide frequency derived error gradient and its application to the binning of metagenome fragments
Authors
- Isaam Saeed
- Saman K Halgamuge
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S10
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Genome-wide analysis of alternative splicing in cow: implications in bovine as a model for human diseases
Authors
- Elsa Chacko
- Shoba Ranganathan
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S11
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MitoVariome: a variome database of human mitochondrial DNA
Authors (first, second and last of 5)
- Yong Seok Lee
- Woo-Yeon Kim
- Jong Bhak
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S12
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MapNext: a software tool for spliced and unspliced alignments and SNP detection of short sequence reads
Authors (first, second and last of 8)
- Hua Bao
- Yuanyan Xiong
- Suhua Shi
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S13
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Measuring similarity between gene expression profiles: a Bayesian approach
Authors
- Viet-Anh Nguyen
- Pietro Lió
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S14
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Improving gene expression similarity measurement using pathway-based analytic dimension
Authors (first, second and last of 5)
- Changwon Keum
- Jung Hoon Woo
- Kyoung Tai No
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S15
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A model selection approach to discover age-dependent gene expression patterns using quantile regression models
Authors (first, second and last of 4)
- Joshua WK Ho
- Maurizio Stefani
- Michael A Charleston
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S16
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MINER: exploratory analysis of gene interaction networks by machine learning from expression data
Authors (first, second and last of 7)
- Sidath Randeni Kadupitige
- Kin Chun Leung
- Bruno A Gaëta
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S17
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PutidaNET: Interactome database service and network analysis of Pseudomonas putida KT2440
Authors (first, second and last of 9)
- Seong-Jin Park
- Jong-Soon Choi
- Seung Il Kim
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S18
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Comparative study of protein-protein interaction observed in PolyGalacturonase-Inhibiting Proteins from Phaseolus vulgaris and Glycine max and PolyGalacturonase from Fusarium moniliforme
Authors
- Aditi Maulik
- Hiren Ghosh
- Soumalee Basu
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S19
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MitoInteractome: Mitochondrial protein interactome database, and its application in 'aging network' analysis
Authors (first, second and last of 8)
- Rohit Reja
- AJ Venkatakrishnan
- Daeui Park
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S20
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A modular kernel approach for integrative analysis of protein domain boundaries
Authors
- Paul D Yoo
- Bing Bing Zhou
- Albert Y Zomaya
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S21
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A sequence-based hybrid predictor for identifying conformationally ambivalent regions in proteins
Authors (first, second and last of 5)
- Yu-Cheng Liu
- Meng-Han Yang
- Yen-Jen Oyang
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S22
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DNA-binding residues and binding mode prediction with binding-mechanism concerned models
Authors (first, second and last of 5)
- Yu-Feng Huang
- Chun-Chin Huang
- Chien-Kang Huang
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S23
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Prediction of avian influenza A binding preference to human receptor using conformational analysis of receptor bound to hemagglutinin
Authors (first, second and last of 6)
- Nipa Jongkon
- Wanwimon Mokmak
- Chak Sangma
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S24
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Phylogenetic reconstruction using secondary structures and sequence motifs of ITS2 rDNA of Paragonimus westermani (Kerbert, 1878) Braun, 1899 (Digenea: Paragonimidae) and related species
Authors (first, second and last of 5)
- Pramod Kumar Prasad
- Veena Tandon
- Anupam Chatterjee
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S25
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Anomaly detection in gene expression via stochastic models of gene regulatory networks
Authors
- Haseong Kim
- Erol Gelenbe
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S26
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Characterizing nucleosome dynamics from genomic and epigenetic information using rule induction learning
Authors
- Ngoc Tu Le
- Tu Bao Ho
- Dang Hung Tran
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S27
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Detecting robust time-delayed regulation in Mycobacterium tuberculosis
Authors
- Iti Chaturvedi
- Jagath C Rajapakse
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S28
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Identification of cell cycle-related regulatory motifs using a kernel canonical correlation analysis
Authors (first, second and last of 5)
- Je-Keun Rhee
- Je-Gun Joung
- Byoung-Tak Zhang
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S29
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Alternative paths in HIV-1 targeted human signal transduction pathways
Authors (first, second and last of 4)
- Sivaraman Balakrishnan
- Oznur Tastan
- Judith Klein-Seetharaman
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S30
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Human liver rate-limiting enzymes influence metabolic flux via branch points and inhibitors
Authors
- Min Zhao
- Hong Qu
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S31
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PDbase: a database of Parkinson's Disease-related genes and genetic variation using substantia nigra ESTs
Authors (first, second and last of 7)
- Jin Ok Yang
- Woo-Yeon Kim
- Nam-Soon Kim
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S32
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A multi-species comparative structural bioinformatics analysis of inherited mutations in α-D-Mannosidase reveals strong genotype-phenotype correlation
Authors
- Javed Mohammed Khan
- Shoba Ranganathan
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S33
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A particle swarm based hybrid system for imbalanced medical data sampling
Authors (first, second and last of 5)
- Pengyi Yang
- Liang Xu
- Albert Y Zomaya
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S34
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COMUS: Clinician-Oriented locus-specific MUtation detection and deposition System
Authors (first, second and last of 11)
- Sungwoong Jho
- Byoung-Chul Kim
- Jong Bhak
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S35
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A proposed minimum skill set for university graduates to meet the informatics needs and challenges of the "-omics" era
Authors (first, second and last of 4)
- Tin Wee Tan
- Shen Jean Lim
- Shoba Ranganathan
- Content type: Proceedings
- Open Access
- Published: 03 December 2009
- Article: S36