Volume 8, supplement issue 7, November 2007
Proceedings of the Fourth Annual MCBIOS Conference. Computational Frontiers in Biomedicine
- Issue editors
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- Dawn Wilkins
- Yuriy Gusev
- Raja Loganantharaj
- Susan Bridges
- Stephen Winters-Hilt
- Jonathan D Wren
25 articles in this issue
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Systems biology approach for mapping the response of human urothelial cells to infection by Enterococcus faecalis
Authors (first, second and last of 7)
- Mikhail G Dozmorov
- Kimberly D Kyker
- Robert E Hurst
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S2
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Metabonomics evaluations of age-related changes in the urinary compositions of male Sprague Dawley rats and effects of data normalization methods on statistical and quantitative analysis
Authors (first, second and last of 6)
- Laura K Schnackenberg
- Jinchun Sun
- Richard D Beger
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S3
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Gene expression changes induced by the tumorigenic pyrrolizidine alkaloid riddelliine in liver of Big Blue rats
Authors (first, second and last of 5)
- Nan Mei
- Lei Guo
- Tao Chen
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S4
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Structure and function predictions of the Msa protein in Staphylococcus aureus
Authors
- Vijayaraj Nagarajan
- Mohamed O Elasri
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S5
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Statistical tools for transgene copy number estimation based on real-time PCR
Authors (first, second and last of 5)
- Joshua S Yuan
- Jason Burris
- C Neal Stewart Jr
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S6
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Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm Eisenia fetida
Authors (first, second and last of 7)
- Mehdi Pirooznia
- Ping Gong
- Youping Deng
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S7
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Robust clustering in high dimensional data using statistical depths
Authors (first, second and last of 4)
- Yuanyuan Ding
- Xin Dang
- Dawn Wilkins
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S8
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The α-Hemolysin nanopore transduction detector – single-molecule binding studies and immunological screening of antibodies and aptamers
Authors
- Stephen Winters-Hilt
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S9
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Nanopore current transduction analysis of protein binding to non-terminal and terminal DNA regions: analysis of transcription factor binding, retroviral DNA terminus dynamics, and retroviral integrase-DNA binding
Authors (first, second and last of 4)
- Stephen Winters-Hilt
- Amanda Davis
- Eric Morales
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S10
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Preliminary nanopore cheminformatics analysis of aptamer-target binding strength
Authors (first, second and last of 4)
- Karen Thomson
- Iftekhar Amin
- Stephen Winters-Hilt
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S11
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Analysis of nanopore detector measurements using Machine-Learning methods, with application to single-molecule kinetic analysis
Authors
- Matthew Landry
- Stephen Winters-Hilt
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S12
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Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks
Authors (first, second and last of 5)
- Peng Li
- Chaoyang Zhang
- Youping Deng
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S13
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Duration learning for analysis of nanopore ionic current blockades
Authors
- Alexander Churbanov
- Carl Baribault
- Stephen Winters-Hilt
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S14
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Analysis of circadian pattern reveals tissue-specific alternative transcription in leptin signaling pathway
Authors
- Andrey A Ptitsyn
- Jeffrey M Gimble
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S15
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Computational analysis of biological functions and pathways collectively targeted by co-expressed microRNAs in cancer
Authors (first, second and last of 5)
- Yuriy Gusev
- Thomas D Schmittgen
- Daniel Brackett
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S16
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Automatic delineation of malignancy in histopathological head and neck slides
Authors (first, second and last of 4)
- Mutlu Mete
- Xiaowei Xu
- Gal Shafirstein
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S17
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SVM clustering
Authors
- Stephen Winters-Hilt
- Sam Merat
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S18
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A novel, fast, HMM-with-Duration implementation – for application with a new, pattern recognition informed, nanopore detector
Authors
- Stephen Winters-Hilt
- Carl Baribault
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S19
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Nanopore-based kinetics analysis of individual antibody-channel and antibody-antigen interactions
Authors (first, second and last of 4)
- Stephen Winters-Hilt
- Eric Morales
- Alexander Stoyanov
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S20
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A survey of DNA motif finding algorithms
Authors
- Modan K Das
- Ho-Kwok Dai
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S21
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Comparison of gene expression profiles altered by comfrey and riddelliine in rat liver
Authors (first, second and last of 5)
- Lei Guo
- Nan Mei
- Tao Chen
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S22
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Prediction of peptides observable by mass spectrometry applied at the experimental set level
Authors (first, second and last of 5)
- William S Sanders
- Susan M Bridges
- Shane C Burgess
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S23
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ProtQuant: a tool for the label-free quantification of MudPIT proteomics data
Authors (first, second and last of 6)
- Susan M Bridges
- G Bryce Magee
- Bindu Nanduri
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S24
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Towards validating the hypothesis of phylogenetic profiling
Authors
- Raja Loganantharaj
- Mazen Atwi
- Content type: Proceedings
- Open Access
- Published: 01 November 2007
- Article: S25