Volume 6, supplement issue 4, December 2005

Italian Society of Bioinformatics (BITS): Annual Meeting 2005

Issue editors

Rita Casadio
Alessandro Guffanti
Manuela Helmer-Citterich
Giancarlo Mauri
Luciano Milanesi
Graziano Pesole
Cecilia Saccone
Giorgio Valle

24 articles in this issue

Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society

Authors (first, second and last of 8)
- Manuela Helmer-Citterich
- Rita Casadio
- Cecilia Saccone
- Content type: Introduction
- Open Access
- Published: 01 December 2005
- Article: S1
Regularized Least Squares Cancer Classifiers from DNA microarray data

Authors (first, second and last of 5)
- Nicola Ancona
- Rosalia Maglietta
- Graziano Pesole
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S2
A Hybrid Genetic-Neural System for Predicting Protein Secondary Structure

Authors (first, second and last of 6)
- Giuliano Armano
- Gianmaria Mancosu
- Eloisa Vargiu
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S3
HmtDB, a Human Mitochondrial Genomic Resource Based on Variability Studies Supporting Population Genetics and Biomedical Research

Authors (first, second and last of 9)
- Marcella Attimonelli
- Matteo Accetturo
- Mila Tommaseo-Ponzetta
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S4
Query3d: a new method for high-throughput analysis of functional residues in protein structures

Authors
- Gabriele Ausiello
- Allegra Via
- Manuela Helmer-Citterich
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S5
MicroGen: a MIAME compliant web system for microarray experiment information and workflow management

Authors (first, second and last of 4)
- Sarah Burgarella
- Dario Cattaneo
- Marco Masseroli
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S6
An integrated approach of immunogenomics and bioinformatics to identify new Tumor Associated Antigens (TAA) for mammary cancer immunological prevention

Authors (first, second and last of 7)
- Federica Cavallo
- Annalisa Astolfi
- Raffaele Calogero
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S7
Secondary structure assignment that accurately reflects physical and evolutionary characteristics

Authors
- Maria Vittoria Cubellis
- Fabien Cailliez
- Simon C Lovell
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S8
ParPEST: a pipeline for EST data analysis based on parallel computing

Authors
- Nunzio D'Agostino
- Mario Aversano
- Maria Luisa Chiusano
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S9
Modelling the interaction of steroid receptors with endocrine disrupting chemicals

Authors (first, second and last of 5)
- Pasqualina D'Ursi
- Erika Salvi
- Ermanna Rovida
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S10
A quantization method based on threshold optimization for microarray short time series

Authors (first, second and last of 6)
- Barbara Di Camillo
- Fatima Sanchez-Cabo
- Claudio Cobelli
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S11
A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins

Authors
- Piero Fariselli
- Pier Luigi Martelli
- Rita Casadio
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S12
A neural strategy for the inference of SH3 domain-peptide interaction specificity

Authors (first, second and last of 4)
- Enrico Ferraro
- Allegra Via
- Manuela Helmer-Citterich
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S13
Mining published lists of cancer related microarray experiments: Identification of a gene expression signature having a critical role in cell-cycle control

Authors
- Giacomo Finocchiaro
- Francesco Mancuso
- Heiko Muller
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S14
-In silico functional characterization of a double histone fold domain from the Heliothis zea virus 1

Authors
- Claudio Greco
- Piercarlo Fantucci
- Luca De Gioia
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S15
ESTree db: a Tool for Peach Functional Genomics

Authors (first, second and last of 6)
- Barbara Lazzari
- Andrea Caprera
- Carlo Pozzi
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S16
Browsing Isolated Population Data

Authors (first, second and last of 10)
- Gianmaria Mancosu
- Massimiliano Cosso
- Mario Pirastu
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S17
Inherited disorder phenotypes: controlled annotation and statistical analysis for knowledge mining from gene lists

Authors (first, second and last of 5)
- Marco Masseroli
- Osvaldo Galati
- Francesco Pinciroli
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S18
High performance workflow implementation for protein surface characterization using grid technology

Authors (first, second and last of 5)
- Ivan Merelli
- Giulia Morra
- Luciano Milanesi
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S19
Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity

Authors (first, second and last of 10)
- Luciano Milanesi
- Mauro Petrillo
- Giovanni Paolella
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S20
HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms

Authors (first, second and last of 6)
- Maria Persico
- Arnaud Ceol
- Gianni Cesareni
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S21
NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae

Authors (first, second and last of 4)
- Davide Rambaldi
- Alessandro Guffanti
- Giuseppe Cassata
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S22
Improving interoperability between microbial information and sequence databases

Authors (first, second and last of 4)
- Paolo Romano
- Peter Dawyndt
- Jean Swings
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S23
Web services and workflow management for biological resources

Authors
- Paolo Romano
- Domenico Marra
- Luciano Milanesi
- Content type: Research article
- Open Access
- Published: 01 December 2005
- Article: S24

Volume 6, supplement issue 4, December 2005

Italian Society of Bioinformatics (BITS): Annual Meeting 2005

Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society

Regularized Least Squares Cancer Classifiers from DNA microarray data

A Hybrid Genetic-Neural System for Predicting Protein Secondary Structure

HmtDB, a Human Mitochondrial Genomic Resource Based on Variability Studies Supporting Population Genetics and Biomedical Research

Query3d: a new method for high-throughput analysis of functional residues in protein structures

MicroGen: a MIAME compliant web system for microarray experiment information and workflow management

An integrated approach of immunogenomics and bioinformatics to identify new Tumor Associated Antigens (TAA) for mammary cancer immunological prevention

Secondary structure assignment that accurately reflects physical and evolutionary characteristics

ParPEST: a pipeline for EST data analysis based on parallel computing

Modelling the interaction of steroid receptors with endocrine disrupting chemicals

A quantization method based on threshold optimization for microarray short time series

A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins

A neural strategy for the inference of SH3 domain-peptide interaction specificity

Mining published lists of cancer related microarray experiments: Identification of a gene expression signature having a critical role in cell-cycle control

-In silico functional characterization of a double histone fold domain from the Heliothis zea virus 1

ESTree db: a Tool for Peach Functional Genomics

Browsing Isolated Population Data

Inherited disorder phenotypes: controlled annotation and statistical analysis for knowledge mining from gene lists

High performance workflow implementation for protein surface characterization using grid technology

Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity

HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms

NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae

Improving interoperability between microbial information and sequence databases

Web services and workflow management for biological resources

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Volume 6, supplement issue 4, December 2005

Italian Society of Bioinformatics (BITS): Annual Meeting 2005

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