Volume 6, supplement issue 1, May 2005
A critical assessment of text mining methods in molecular biology
- Issue editors
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- Christian Blaschke
- Lynette Hirschman
- Alfonso Valencia
- Alexander Yeh
23 articles in this issue
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BioCreAtIvE Task 1A: gene mention finding evaluation
Authors (first, second and last of 4)
- Alexander Yeh
- Alexander Morgan
- Lynette Hirschman
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S2
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GENETAG: a tagged corpus for gene/protein named entity recognition
Authors (first, second and last of 5)
- Lorraine Tanabe
- Natalie Xie
- W John Wilbur
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S3
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BioCreAtIvE Task1A: entity identification with a stochastic tagger
Authors (first, second and last of 4)
- Shuhei Kinoshita
- K Bretonnel Cohen
- Lawrence Hunter
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S4
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Exploring the boundaries: gene and protein identification in biomedical text
Authors (first, second and last of 6)
- Jenny Finkel
- Shipra Dingare
- Claire Grover
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S5
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Identifying gene and protein mentions in text using conditional random fields
Authors
- Ryan McDonald
- Fernando Pereira
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S6
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Recognition of protein/gene names from text using an ensemble of classifiers
Authors (first, second and last of 5)
- GuoDong Zhou
- Dan Shen
- SoonHeng Tan
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S7
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Gene/protein name recognition based on support vector machine using dictionary as features
Authors (first, second and last of 5)
- Tomohiro Mitsumori
- Sevrani Fation
- Hirohumi Doi
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S8
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Systematic feature evaluation for gene name recognition
Authors (first, second and last of 8)
- Jörg Hakenberg
- Steffen Bickel
- Tobias Scheffer
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S9
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Text Detective: a rule-based system for gene annotation in biomedical texts
Authors
- Javier Tamames
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S10
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Overview of BioCreAtIvE task 1B: normalized gene lists
Authors (first, second and last of 4)
- Lynette Hirschman
- Marc Colosimo
- Alexander Yeh
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S11
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Data preparation and interannotator agreement: BioCreAtIvE Task 1B
Authors (first, second and last of 5)
- Marc E Colosimo
- Alexander A Morgan
- Lynette Hirschman
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S12
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Automatically annotating documents with normalized gene lists
Authors
- Jeremiah Crim
- Ryan McDonald
- Fernando Pereira
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S13
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ProMiner: rule-based protein and gene entity recognition
Authors (first, second and last of 5)
- Daniel Hanisch
- Katrin Fundel
- Juliane Fluck
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S14
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A simple approach for protein name identification: prospects and limits
Authors (first, second and last of 4)
- Katrin Fundel
- Daniel Güttler
- Joannis Apostolakis
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S15
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Evaluation of BioCreAtIvE assessment of task 2
Authors (first, second and last of 4)
- Christian Blaschke
- Eduardo Andres Leon
- Alfonso Valencia
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S16
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An evaluation of GO annotation retrieval for BioCreAtIvE and GOA
Authors (first, second and last of 8)
- Evelyn B Camon
- Daniel G Barrell
- Rolf Apweiler
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S17
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Learning Statistical Models for Annotating Proteins with Function Information using Biomedical Text
Authors
- Soumya Ray
- Mark Craven
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S18
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A sentence sliding window approach to extract protein annotations from biomedical articles
Authors
- Martin Krallinger
- Maria Padron
- Alfonso Valencia
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S19
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Protein annotation as term categorization in the gene ontology using word proximity networks
Authors (first, second and last of 7)
- Karin Verspoor
- Judith Cohn
- Tiago Simas
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S20
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Finding genomic ontology terms in text using evidence content
Authors
- Francisco M Couto
- Mário J Silva
- Pedro M Coutinho
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S21
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Mining protein function from text using term-based support vector machines
Authors
- Simon B Rice
- Goran Nenadic
- Benjamin J Stapley
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S22
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Data-poor categorization and passage retrieval for Gene Ontology Annotation in Swiss-Prot
Authors (first, second and last of 4)
- Frédéric Ehrler
- Antoine Geissbühler
- Patrick Ruch
- Content type: Report
- Open Access
- Published: 24 May 2005
- Article: S23