Volume 24, issue 1, December 2023
486 articles in this issue
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PWSC: a novel clustering method based on polynomial weight-adjusted sparse clustering for sparse biomedical data and its application in cancer subtyping
Authors (first, second and last of 6)
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Injectiondesign: web service of plate design with optimized stratified block randomization for modern GC/LC-MS-based sample preparation
Authors (first, second and last of 6)
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Advancing drug–target interaction prediction: a comprehensive graph-based approach integrating knowledge graph embedding and ProtBert pretraining
Authors (first, second and last of 4)
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BioEGRE: a linguistic topology enhanced method for biomedical relation extraction based on BioELECTRA and graph pointer neural network
Authors (first, second and last of 5)
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PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins
Authors (first, second and last of 9)
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A compressed large language model embedding dataset of ICD 10 CM descriptions
Authors (first, second and last of 6)
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scInterpreter: a knowledge-regularized generative model for interpretably integrating scRNA-seq data
Authors (first, second and last of 7)
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Cellstitch: 3D cellular anisotropic image segmentation via optimal transport
Authors (first, second and last of 4)
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A novel and innovative cancer classification framework through a consecutive utilization of hybrid feature selection
Authors (first, second and last of 8)
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Predicting potential microbe-disease associations based on auto-encoder and graph convolution network
Authors (first, second and last of 8)
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Twnbiome: a public database of the healthy Taiwanese gut microbiome
Authors (first, second and last of 12)
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DL-PPI: a method on prediction of sequenced protein–protein interaction based on deep learning
Authors (first, second and last of 5)
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Performance analysis of conventional and AI-based variant callers using short and long reads
Authors
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PhytoPipe: a phytosanitary pipeline for plant pathogen detection and diagnosis using RNA-seq data
Authors (first, second and last of 7)
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A score-based method of immune status evaluation for healthy individuals with complete blood cell counts
Authors (first, second and last of 7)
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Hierarchical classification-based pan-cancer methylation analysis to classify primary cancer
Authors (first, second and last of 8)
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Allele-specific binding (ASB) analyzer for annotation of allele-specific binding SNPs
Authors (first, second and last of 4)
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SingleScan: a comprehensive resource for single-cell sequencing data processing and mining
Authors (first, second and last of 9)
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Incorporating mutational heterogeneity to identify genes that are enriched for synonymous mutations in cancer
Authors (first, second and last of 4)
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Lokatt: a hybrid DNA nanopore basecaller with an explicit duration hidden Markov model and a residual LSTM network
Authors (first, second and last of 4)
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pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods
Authors (first, second and last of 7)
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Detection for melanoma skin cancer through ACCF, BPPF, and CLF techniques with machine learning approach
Authors (first, second and last of 8)
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Protein–protein interaction site prediction by model ensembling with hybrid feature and self-attention
Authors (first, second and last of 5)
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HostNet: improved sequence representation in deep neural networks for virus-host prediction
Authors (first, second and last of 7)
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PMFFRC: a large-scale genomic short reads compression optimizer via memory modeling and redundant clustering
Authors (first, second and last of 6)
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Completing a genomic characterisation of microscopic tumour samples with copy number
Authors (first, second and last of 7)
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Biocaiv: an integrative webserver for motif-based clustering analysis and interactive visualization of biological networks
Authors (first, second and last of 8)
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Detection of continuous hierarchical heterogeneity by single-cell surface antigen analysis in the prognosis evaluation of acute myeloid leukaemia
Authors (first, second and last of 9)
This is part of 2 collections:
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Machine learning-based approaches for ubiquitination site prediction in human proteins
Authors (first, second and last of 5)
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Predicting anticancer synergistic drug combinations based on multi-task learning
Authors (first, second and last of 7)
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AptaTrans: a deep neural network for predicting aptamer-protein interaction using pretrained encoders
Authors (first, second and last of 8)
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scMuffin: an R package to disentangle solid tumor heterogeneity by single-cell gene expression analysis
Authors (first, second and last of 15)
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CoDock-Ligand: combined template-based docking and CNN-based scoring in ligand binding prediction
Authors (first, second and last of 7)
This is part of 2 collections:
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MiREx: mRNA levels prediction from gene sequence and miRNA target knowledge
Authors (first, second and last of 4)
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A novel efficient drug repurposing framework through drug-disease association data integration using convolutional neural networks
Authors (first, second and last of 4)
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Improved quality metrics for association and reproducibility in chromatin accessibility data using mutual information
Authors (first, second and last of 7)
