Detecting Succinylation sites from protein sequences using ensemble support vector machine
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Volume 19, issue 1, December 2018
376 articles in this issue
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Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons
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A selective method for optimizing ensemble docking-based experiments on an InhA Fully-Flexible receptor model
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ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers
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Predicting drug-disease associations by using similarity constrained matrix factorization
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Evaluating methods of inferring gene regulatory networks highlights their lack of performance for single cell gene expression data
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Performance of epistasis detection methods in semi-simulated GWAS
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Algorithms designed for compressed-gene-data transformation among gene banks with different references
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Feature extraction method for proteins based on Markov tripeptide by compressive sensing
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SamSelect: a sample sequence selection algorithm for quorum planted motif search on large DNA datasets
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Taxonomy-aware feature engineering for microbiome classification
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Epigenetic machine learning: utilizing DNA methylation patterns to predict spastic cerebral palsy
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Mutational Signatures in Cancer (MuSiCa): a web application to implement mutational signatures analysis in cancer samples
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DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data
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Variant site strain typer (VaST): efficient strain typing using a minimal number of variant genomic sites
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Blazing Signature Filter: a library for fast pairwise similarity comparisons
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DrImpute: imputing dropout events in single cell RNA sequencing data
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MERIT reveals the impact of genomic context on sequencing error rate in ultra-deep applications
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A computational approach to identify cellular heterogeneity and tissue-specific gene regulatory networks
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mySyntenyPortal: an application package to construct websites for synteny block analysis
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MGOGP: a gene module-based heuristic algorithm for cancer-related gene prioritization
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Discovering mutated driver genes through a robust and sparse co-regularized matrix factorization framework with prior information from mRNA expression patterns and interaction network
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Sequence-based prediction of physicochemical interactions at protein functional sites using a function-and-interaction-annotated domain profile database
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Genome-wide prediction of cis-regulatory regions using supervised deep learning methods
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Rigorous optimisation of multilinear discriminant analysis with Tucker and PARAFAC structures
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SemaTyP: a knowledge graph based literature mining method for drug discovery
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EqualTDRL: illustrating equivalent tandem duplication random loss rearrangements
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RnaSeqSampleSize: real data based sample size estimation for RNA sequencing
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Recommending plant taxa for supporting on-site species identification
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Combining RNA-seq data and homology-based gene prediction for plants, animals and fungi
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JCDSA: a joint covariate detection tool for survival analysis on tumor expression profiles
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QTLTableMiner++: semantic mining of QTL tables in scientific articles
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polyClustR: defining communities of reconciled cancer subtypes with biological and prognostic significance
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NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
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A website to identify shared genes in Saccharomyces cerevisiae homozygous deletion library screens
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REHUNT: a reliable and open source package for restriction enzyme hunting
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NPBSS: a new PacBio sequencing simulator for generating the continuous long reads with an empirical model
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Neural networks for link prediction in realistic biomedical graphs: a multi-dimensional evaluation of graph embedding-based approaches
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SAMSA2: a standalone metatranscriptome analysis pipeline
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Robust joint score tests in the application of DNA methylation data analysis
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Visualizing histopathologic deep learning classification and anomaly detection using nonlinear feature space dimensionality reduction
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GPU-accelerated iterative reconstruction for limited-data tomography in CBCT systems
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Correction to: HiComet: a high-throughput comet analysis tool for large-scale DNA damage assessment
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An automatic method to calculate heart rate from zebrafish larval cardiac videos
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Ensemble outlier detection and gene selection in triple-negative breast cancer data
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