Volume 13, supplement issue 19, December 2012

Proceedings of the Tenth Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics

Issue editors

Mathieu Banchette
Marilia D V Braga
Marie-France Sagot

18 articles in this issue

On pairwise distances and median score of three genomes under DCJ

Authors
- Sergey Aganezov Jr
- Max A Alekseyev
- Content type: Proceedings
- Open Access
- Published: 19 December 2012
- Article: S1
Exploiting ancestral mammalian genomes for the prediction of human transcription factor binding sites

Authors
- Mathieu Blanchette
- Content type: Proceedings
- Open Access
- Published: 19 December 2012
- Article: S2
Gene family assignment-free comparative genomics

Authors
- Daniel Doerr
- Annelyse Thévenin
- Jens Stoye
- Content type: Proceedings
- Open Access
- Published: 19 December 2012
- Article: S3
A flexible ancestral genome reconstruction method based on gapped adjacencies

Authors
- Yves Gagnon
- Mathieu Blanchette
- Nadia El-Mabrouk
- Content type: Proceedings
- Open Access
- Published: 19 December 2012
- Article: S4
Medians seek the corners, and other conjectures

Authors
- Maryam Haghighi
- David Sankoff
- Content type: Proceedings
- Open Access
- Published: 19 December 2012
- Article: S5
From event-labeled gene trees to species trees

Authors (first, second and last of 6)
- Maribel Hernandez-Rosales
- Marc Hellmuth
- Peter F Stadler
- Content type: Proceedings
- Open Access
- Published: 19 December 2012
- Article: S6
Multiple genome comparison based on overlap regions of pairwise local alignments

Authors
- Katharina Jahn
- Henner Sudek
- Jens Stoye
- Content type: Proceedings
- Open Access
- Published: 19 December 2012
- Article: S7
A consolidation algorithm for genomes fractionated after higher order polyploidization

Authors (first, second and last of 4)
- Katharina Jahn
- Chunfang Zheng
- David Sankoff
- Content type: Proceedings
- Open Access
- Published: 19 December 2012
- Article: S8
Reconstructing genome mixtures from partial adjacencies

Authors
- Ahmad Mahmoody
- Crystal L Kahn
- Benjamin J Raphael
- Content type: Proceedings
- Open Access
- Published: 19 December 2012
- Article: S9
Compareads: comparing huge metagenomic experiments

Authors (first, second and last of 5)
- Nicolas Maillet
- Claire Lemaitre
- Pierre Peterlongo
- Content type: Proceedings
- Open Access
- Published: 19 December 2012
- Article: S10
Linearization of ancestral multichromosomal genomes

Authors (first, second and last of 5)
- Ján Maňuch
- Murray Patterson
- Eric Tannier
- Content type: Proceedings
- Open Access
- Published: 19 December 2012
- Article: S11
Inference of reticulate evolutionary histories by maximum likelihood: the performance of information criteria

Authors
- Hyun Jung Park
- Luay Nakhleh
- Content type: Proceedings
- Open Access
- Published: 19 December 2012
- Article: S12
Approximating the edit distance for genomes with duplicate genes under DCJ, insertion and deletion

Authors
- Mingfu Shao
- Yu Lin
- Content type: Proceedings
- Open Access
- Published: 19 December 2012
- Article: S13
Restricted DCJ-indel model: sorting linear genomes with DCJ and indels

Authors (first, second and last of 4)
- Poly H da Silva
- Raphael Machado
- Marília DV Braga
- Content type: Proceedings
- Open Access
- Published: 19 December 2012
- Article: S14
Gene trees and species trees: irreconcilable differences

Authors
- Krister M Swenson
- Nadia El-Mabrouk
- Content type: Proceedings
- Open Access
- Published: 19 December 2012
- Article: S15
A graph-theoretic approach for inparalog detection

Authors
- Olivier Tremblay-Savard
- Krister M Swenson
- Content type: Proceedings
- Open Access
- Published: 19 December 2012
- Article: S16
ARG-based genome-wide analysis of cacao cultivars

Authors (first, second and last of 5)
- Filippo Utro
- Omar Eduardo Cornejo
- Laxmi Parida
- Content type: Proceedings
- Open Access
- Published: 19 December 2012
- Article: S17
TIGER: tiled iterative genome assembler

Authors (first, second and last of 6)
- Xiao-Long Wu
- Yun Heo
- Jian Ma
- Content type: Proceedings
- Open Access
- Published: 19 December 2012
- Article: S18

Volume 13, supplement issue 19, December 2012

Proceedings of the Tenth Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics

On pairwise distances and median score of three genomes under DCJ

Exploiting ancestral mammalian genomes for the prediction of human transcription factor binding sites

Gene family assignment-free comparative genomics

A flexible ancestral genome reconstruction method based on gapped adjacencies

Medians seek the corners, and other conjectures

From event-labeled gene trees to species trees

Multiple genome comparison based on overlap regions of pairwise local alignments

A consolidation algorithm for genomes fractionated after higher order polyploidization

Reconstructing genome mixtures from partial adjacencies

Compareads: comparing huge metagenomic experiments

Linearization of ancestral multichromosomal genomes

Inference of reticulate evolutionary histories by maximum likelihood: the performance of information criteria

Approximating the edit distance for genomes with duplicate genes under DCJ, insertion and deletion

Restricted DCJ-indel model: sorting linear genomes with DCJ and indels

Gene trees and species trees: irreconcilable differences

A graph-theoretic approach for inparalog detection

ARG-based genome-wide analysis of cacao cultivars

TIGER: tiled iterative genome assembler

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Volume 13, supplement issue 19, December 2012

Proceedings of the Tenth Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics

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