Volume 12, supplement issue 8, December 2011

The Third BioCreative - Critical Assessment of Information Extraction in Biology Challenge

Issue editors

Cecilia Arighi
Kevin Cohen
Lynette Hirschman
Martin Krallinger
Zhiyong Lu
Alfonso Valencia
John Wilbur
Cathy Wu

13 articles in this issue

Overview of the BioCreative III Workshop

Authors (first, second and last of 8)
- Cecilia N Arighi
- Zhiyong Lu
- Cathy H Wu
- Content type: Research
- Open Access
- Published: 03 October 2011
- Article: S1
The gene normalization task in BioCreative III

Authors (first, second and last of 28)
- Zhiyong Lu
- Hung-Yu Kao
- W John Wilbur
- Content type: Research
- Open Access
- Published: 03 October 2011
- Article: S2
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

Authors (first, second and last of 34)
- Martin Krallinger
- Miguel Vazquez
- Alfonso Valencia
- Content type: Research
- Open Access
- Published: 03 October 2011
- Article: S3
BioCreative III interactive task: an overview

Authors (first, second and last of 27)
- Cecilia N Arighi
- Phoebe M Roberts
- Cathy H Wu
- Content type: Research
- Open Access
- Published: 03 October 2011
- Article: S4
Cross-species gene normalization by species inference

Authors
- Chih-Hsuan Wei
- Hung-Yu Kao
- Content type: Research
- Open Access
- Published: 03 October 2011
- Article: S5
Soft tagging of overlapping high confidence gene mention variants for cross-species full-text gene normalization

Authors
- Cheng-Ju Kuo
- Maurice HT Ling
- Chun-Nan Hsu
- Content type: Research
- Open Access
- Published: 03 October 2011
- Article: S6
Multi-stage gene normalization for full-text articles with context-based species filtering for dynamic dictionary entry selection

Authors
- Richard Tzong-Han Tsai
- Po-Ting Lai
- Content type: Research
- Open Access
- Published: 03 October 2011
- Article: S7
Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases

Authors (first, second and last of 9)
- Andrew Chatr-aryamontri
- Andrew Winter
- Mike Tyers
- Content type: Research
- Open Access
- Published: 03 October 2011
- Article: S8
Classifying protein-protein interaction articles using word and syntactic features

Authors
- Sun Kim
- W John Wilbur
- Content type: Research
- Open Access
- Published: 03 October 2011
- Article: S9
Simple and efficient machine learning frameworks for identifying protein-protein interaction relevant articles and experimental methods used to study the interactions

Authors
- Shashank Agarwal
- Feifan Liu
- Hong Yu
- Content type: Research
- Open Access
- Published: 03 October 2011
- Article: S10
Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature

Authors (first, second and last of 8)
- Xinglong Wang
- Rafal Rak
- Sophia Ananiadou
- Content type: Research
- Open Access
- Published: 03 October 2011
- Article: S11
A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature

Authors (first, second and last of 7)
- Anália Lourenço
- Michael Conover
- Luis M Rocha
- Content type: Research
- Open Access
- Published: 03 October 2011
- Article: S12
Detection of interaction articles and experimental methods in biomedical literature

Authors
- Gerold Schneider
- Simon Clematide
- Fabio Rinaldi
- Content type: Research
- Open Access
- Published: 03 October 2011
- Article: S13

Volume 12, supplement issue 8, December 2011

The Third BioCreative - Critical Assessment of Information Extraction in Biology Challenge

Overview of the BioCreative III Workshop

The gene normalization task in BioCreative III

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

BioCreative III interactive task: an overview

Cross-species gene normalization by species inference

Soft tagging of overlapping high confidence gene mention variants for cross-species full-text gene normalization

Multi-stage gene normalization for full-text articles with context-based species filtering for dynamic dictionary entry selection

Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases

Classifying protein-protein interaction articles using word and syntactic features

Simple and efficient machine learning frameworks for identifying protein-protein interaction relevant articles and experimental methods used to study the interactions

Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature

A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature

Detection of interaction articles and experimental methods in biomedical literature

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Volume 12, supplement issue 8, December 2011

The Third BioCreative - Critical Assessment of Information Extraction in Biology Challenge

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Authors (first, second and last of 27)

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