Volume 11, supplement issue 6, October 2010
Proceedings of the Seventh Annual MCBIOS Conference. Bioinformatics: Systems, Biology, Informatics and Computation
- Issue editors
-
- Jonathan D Wren Sr
- Dan Berleant
- Susan M Bridges
- Doris M Kupfer
- Edward J Perkins
29 articles in this issue
-
-
Applying internal coordinate mechanics to model the interactions between 8R-lipoxygenase and its substrate
Authors
- Shuju Bai
- Tianchuan Du
- Ebrahim Khosravi
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S2
-
Assessing constancy of substitution rates in viruses over evolutionary time
Authors
- Ulrich Melcher
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S3
-
An FDA bioinformatics tool for microbial genomics research on molecular characterization of bacterial foodborne pathogens using microarrays
Authors (first, second and last of 17)
- Hong Fang
- Joshua Xu
- Weida Tong
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S4
-
The EDKB: an established knowledge base for endocrine disrupting chemicals
Authors (first, second and last of 9)
- Don Ding
- Lei Xu
- Weida Tong
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S5
-
Two new ArrayTrack libraries for personalized biomedical research
Authors (first, second and last of 8)
- Joshua Xu
- Carolyn Wise
- Jim Kaput
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S6
-
PEPPI: a peptidomic database of human protein isoforms for proteomics experiments
Authors
- Ao Zhou
- Fan Zhang
- Jake Y Chen
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S7
-
Identification of diagnostic subnetwork markers for cancer in human protein-protein interaction network
Authors
- Junjie Su
- Byung-Jun Yoon
- Edward R Dougherty
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S8
-
Analysis of Bovine Viral Diarrhea Viruses-infected monocytes: identification of cytopathic and non-cytopathic biotype differences
Authors (first, second and last of 4)
- Mais Ammari
- Fiona M McCarthy
- Lesya M Pinchuk
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S9
-
Evaluation of gene expression data generated from expired Affymetrix GeneChip® microarrays using MAQC reference RNA samples
Authors (first, second and last of 8)
- Zhining Wen
- Charles Wang
- Leming Shi
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S10
-
Mixed reality simulation of rasping procedure in artificial cervical disc replacement (ACDR) surgery
Authors (first, second and last of 4)
- Tansel Halic
- Sinan Kockara
- Richard Rowe
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S11
-
Enzyme structure dynamics of xylanase I from Trichoderma longibrachiatum
Authors (first, second and last of 6)
- Ugur Uzuner
- Weibing Shi
- Joshua S Yuan
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S12
-
Quail Genomics: a knowledgebase for Northern bobwhite
Authors (first, second and last of 4)
- Arun Rawat
- Kurt A Gust
- Edward J Perkins
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S13
-
Discovering gene functional relationships using FAUN (Feature Annotation Using Nonnegative matrix factorization)
Authors
- Elina Tjioe
- Michael W Berry
- Ramin Homayouni
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S14
-
Next generation models for storage and representation of microbial biological annotation
Authors (first, second and last of 4)
- Daniel J Quest
- Miriam L Land
- Robert W Cottingham
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S15
-
HPIDB - a unified resource for host-pathogen interactions
Authors
- Ranjit Kumar
- Bindu Nanduri
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S16
-
Promoter prediction in E. coli based on SIDD profiles and Artificial Neural Networks
Authors
- Charles Bland
- Abigail S Newsome
- Aleksandra A Markovets
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S17
-
Phylometrics: a pipeline for inferring phylogenetic trees from a sequence relationship network perspective
Authors
- Samuel A Smits
- Cleber C Ouverney
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S18
-
Time lagged information theoretic approaches to the reverse engineering of gene regulatory networks
Authors (first, second and last of 5)
- Vijender Chaitankar
- Preetam Ghosh
- Chaoyang Zhang
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S19
-
A framework for automated enrichment of functionally significant inverted repeats in whole genomes
Authors
- Cyriac Kandoth
- Fikret Ercal
- Ronald L Frank
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S20
-
A predictive model for secondary RNA structure using graph theory and a neural network
Authors (first, second and last of 4)
- Denise R Koessler
- Debra J Knisley
- Teresa Haynes
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S21
-
Comparative genome analysis of PHB gene family reveals deep evolutionary origins and diverse gene function
Authors (first, second and last of 4)
- Chao Di
- Wenying Xu
- Joshua S Yuan
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S22
-
Lesion detection in demoscopy images with novel density-based and active contour approaches
Authors
- Mutlu Mete
- Nikolay Metodiev Sirakov
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S23
-
Dynamics of protofibril elongation and association involved in Aβ42 peptide aggregation in Alzheimer’s disease
Authors (first, second and last of 4)
- Preetam Ghosh
- Amit Kumar
- Vijayaraghavan Rangachari
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S24
-
Integrated database for identifying candidate genes for Aspergillus flavus resistance in maize
Authors (first, second and last of 15)
- Rowena Y Kelley
- Cathy Gresham
- W P Williams
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S25
-
Analysis of density based and fuzzy c-means clustering methods on lesion border extraction in dermoscopy images
Authors (first, second and last of 4)
- Sinan Kockara
- Mutlu Mete
- Kemal Aydin
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S26
-
Constructing non-stationary Dynamic Bayesian Networks with a flexible lag choosing mechanism
Authors
- Yi Jia
- Jun Huan
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S27
-
IView: introgression library visualization and query tool
Authors
- Christopher A Bottoms
- Sherry Flint-Garcia
- Michael D McMullen
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S28
-
GOModeler- A tool for hypothesis-testing of functional genomics datasets
Authors (first, second and last of 7)
- Prashanti Manda
- McKinley G Freeman
- Shane C Burgess
- Content type: Proceedings
- Open Access
- Published: 07 October 2010
- Article: S29