Volume 11, supplement issue 1, January 2010
Selected articles from the Eighth Asia-Pacific Bioinformatics Conference (APBC 2010)
- Issue editors
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- Laxmi Parida
- Gene Myers
68 articles in this issue
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Nonnegative principal component analysis for mass spectral serum profiles and biomarker discovery
Authors
- Henry Han
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S1
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MTar: a computational microRNA target prediction architecture for human transcriptome
Authors (first, second and last of 5)
- Vinod Chandra
- Reshmi Girijadevi
- Radhakrishna M Pillai
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S2
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Predicting the protein-protein interactions using primary structures with predicted protein surface
Authors
- Darby Tien-Hao Chang
- Yu-Tang Syu
- Po-Chang Lin
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S3
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Better score function for peptide identification with ETD MS/MS spectra
Authors (first, second and last of 4)
- Xiaowen Liu
- Baozhen Shan
- Bin Ma
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S4
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A multi-filter enhanced genetic ensemble system for gene selection and sample classification of microarray data
Authors (first, second and last of 4)
- Pengyi Yang
- Bing B Zhou
- Albert Y Zomaya
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S5
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Genome-wide sequence-based prediction of peripheral proteins using a novel semi-supervised learning technique
Authors
- Nitin Bhardwaj
- Mark Gerstein
- Hui Lu
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S6
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Molecular dynamics simulation studies and in vitro site directed mutagenesis of avian beta-defensin Apl_AvBD2
Authors
- Soja Saghar Soman
- Krishnankutty Chandrika Sivakumar
- Easwaran Sreekumar
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S7
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Knowledge-based analysis of microarrays for the discovery of transcriptional regulation relationships
Authors (first, second and last of 4)
- Junhee Seok
- Amit Kaushal
- Wenzhong Xiao
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S8
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Prediction of protein structural classes for low-homology sequences based on predicted secondary structure
Authors
- Jian-Yi Yang
- Zhen-Ling Peng
- Xin Chen
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S9
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PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship
Authors (first, second and last of 4)
- Inkyung Jung
- Akihisa Matsuyama
- Dongsup Kim
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S10
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Fast motif recognition via application of statistical thresholds
Authors
- Christina Boucher
- James King
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S11
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Short clones or long clones? A simulation study on the use of paired reads in metagenomics
Authors
- Suparna Mitra
- Max Schubach
- Daniel H Huson
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S12
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In silico screening of herbal and nanoparticle lead compounds for effectivity against H5N1, H1N1 neuraminidase and telomerase
Authors (first, second and last of 6)
- Sayak Ganguli
- Manjita Mazumder
- Abhijit Datta
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S13
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Prediction of novel miRNAs and associated target genes in Glycine max
Authors (first, second and last of 12)
- Trupti Joshi
- Zhe Yan
- Gary Stacey
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S14
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MrsRF: an efficient MapReduce algorithm for analyzing large collections of evolutionary trees
Authors
- Suzanne J Matthews
- Tiffani L Williams
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S15
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Classification of protein sequences by means of irredundant patterns
Authors
- Matteo Comin
- Davide Verzotto
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S16
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Amino acid classification based spectrum kernel fusion for protein subnuclear localization
Authors
- Suyu Mei
- Wang Fei
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S17
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Identifying main effects and epistatic interactions from large-scale SNP data via adaptive group Lasso
Authors (first, second and last of 5)
- Can Yang
- Xiang Wan
- Weichuan Yu
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S18
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AntiBP2: improved version of antibacterial peptide prediction
Authors
- Sneh Lata
- Nitish K Mishra
- Gajendra PS Raghava
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S19
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Integration of multiple data sources to prioritize candidate genes using discounted rating system
Authors
- Yongjin Li
- Jagdish C Patra
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S20
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Learning to predict expression efficacy of vectors in recombinant protein production
Authors (first, second and last of 6)
- Wen-Ching Chan
- Po-Huang Liang
- Chun-Nan Hsu
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S21
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SFSSClass: an integrated approach for miRNA based tumor classification
Authors (first, second and last of 4)
- Ramkrishna Mitra
- Sanghamitra Bandyopadhyay
- Michael Q Zhang
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S22
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An ontology-based search engine for protein-protein interactions
Authors
- Byungkyu Park
- Kyungsook Han
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S23
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HORI: a web server to compute Higher Order Residue Interactions in protein structures
Authors (first, second and last of 5)
- Pandurangan Sundaramurthy
- Khader Shameer
- Ramanathan Sowdhamini
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S24
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A hub-attachment based method to detect functional modules from confidence-scored protein interactions and expression profiles
Authors (first, second and last of 5)
- Chia-Hao Chin
- Shu-Hwa Chen
- Chung-Yen Lin
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S25
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Using genomic signatures for HIV-1 sub-typing
Authors
- Aridaman Pandit
- Somdatta Sinha
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S26
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Genome rearrangements with duplications
Authors
- Martin Bader
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S27
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Decoding HMMs using the k best paths: algorithms and applications
Authors
- Daniel G Brown
- Daniil Golod
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S28
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Prediction of novel precursor miRNAs using a context-sensitive hidden Markov model (CSHMM)
Authors (first, second and last of 4)
- Sumeet Agarwal
- Candida Vaz
- Ashwin Srinivasan
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S29
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Heuristics for the inversion median problem
Authors (first, second and last of 5)
- Vaibhav Rajan
- Andrew Wei Xu
- Bernard ME Moret
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S30
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Reaction graph kernels predict EC numbers of unknown enzymatic reactions in plant secondary metabolism
Authors (first, second and last of 4)
- Hiroto Saigo
- Masahiro Hattori
- Koji Tsuda
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S31
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Detection of characteristic sub pathway network for angiogenesis based on the comprehensive pathway network
Authors
- Yezhou Huang
- Shao Li
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S32
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A weighted q-gram method for glycan structure classification
Authors (first, second and last of 4)
- Limin Li
- Wai-Ki Ching
- Kiyoko F Aoki-Kinoshita
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S33
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Efficient protein alignment algorithm for protein search
Authors
- Zaixin Lu
- Zhiyu Zhao
- Bin Fu
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S34
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Functional characterization and topological modularity of molecular interaction networks
Authors
- Jayesh Pandey
- Mehmet Koyutürk
- Ananth Grama
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S35
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Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspective
Authors
- SPT Krishnan
- Sim Sze Liang
- Bharadwaj Veeravalli
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S36
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Hit integration for identifying optimal spaced seeds
Authors
- Won-Hyoung Chung
- Seong-Bae Park
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S37
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Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways
Authors (first, second and last of 4)
- Adi Mano
- Tamir Tuller
- Ron Y Pinter
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S38
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A hybrid approach to protein folding problem integrating constraint programming with local search
Authors
- Abu Dayem Ullah
- Kathleen Steinhöfel
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S39
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New decoding algorithms for Hidden Markov Models using distance measures on labellings
Authors
- Daniel G Brown
- Jakub Truszkowski
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S40
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Analysis of interactions between ribosomal proteins and RNA structural motifs
Authors
- Giovanni Ciriello
- Claudio Gallina
- Concettina Guerra
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S41
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Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
Authors
- Mukul S Bansal
- J Gordon Burleigh
- Oliver Eulenstein
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S42
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Stability analysis of the GAL regulatory network in Saccharomyces cerevisiae and Kluyveromyces lactis
Authors (first, second and last of 6)
- Vishwesh V Kulkarni
- Venkatesh Kareenhalli
- Ganesh A Viswanathan
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S43
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Structure prediction for the helical skeletons detected from the low resolution protein density map
Authors
- Kamal Al Nasr
- Weitao Sun
- Jing He
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S44
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A novel approach for haplotype-based association analysis using family data
Authors
- Yixuan Chen
- Xin Li
- Jing Li
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S45
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A fast indexing approach for protein structure comparison
Authors (first, second and last of 4)
- Lei Zhang
- James Bailey
- Kotagiri Ramamohanarao
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S46
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Computational prediction of type III secreted proteins from gram-negative bacteria
Authors (first, second and last of 5)
- Yang Yang
- Jiayuan Zhao
- Tao Jiang
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S47
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Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information
Authors
- Nitish K Mishra
- Gajendra PS Raghava
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S48
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Comparative analysis of thermophilic and mesophilic proteins using Protein Energy Networks
Authors
- MS Vijayabaskar
- Saraswathi Vishveshwara
- Content type: Research
- Open Access
- Published: 18 January 2010
- Article: S49