A two-step site and mRNA-level model for predicting microRNA targets
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Volume 11, issue 1, December 2010
612 articles in this issue
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SIDEKICK: Genomic data driven analysis and decision-making framework
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BiologicalNetworks 2.0 - an integrative view of genome biology data
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MBAT: A scalable informatics system for unifying digital atlasing workflows
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The complexity of gene expression dynamics revealed by permutation entropy
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Kernel based methods for accelerated failure time model with ultra-high dimensional data
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New insights into protein-protein interaction data lead to increased estimates of the S. cerevisiae interactome size
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Computing DNA duplex instability profiles efficiently with a two-state model: trends of promoters and binding sites
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Content-based microarray search using differential expression profiles
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A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
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SNPexp - A web tool for calculating and visualizing correlation between HapMap genotypes and gene expression levels
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Initial steps towards a production platform for DNA sequence analysis on the grid
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Extending pathways and processes using molecular interaction networks to analyse cancer genome data
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PETALS: Proteomic Evaluation and Topological Analysis of a mutated Locus' Signaling
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BIGSdb: Scalable analysis of bacterial genome variation at the population level
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Addressing the Challenge of Defining Valid Proteomic Biomarkers and Classifiers
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Application of Wavelet Packet Transform to detect genetic polymorphisms by the analysis of inter-Alu PCR patterns
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Haplotype association analyses in resources of mixed structure using Monte Carlo testing
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An improved machine learning protocol for the identification of correct Sequest search results
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Merged consensus clustering to assess and improve class discovery with microarray data
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BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation
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IntelliGO: a new vector-based semantic similarity measure including annotation origin
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Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
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Prediction of RNA secondary structure by maximizing pseudo-expected accuracy
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Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation
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LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes
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Preprocessing of gene expression data by optimally robust estimators
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Systematic integration of experimental data and models in systems biology
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The INTERPRET Decision-Support System version 3.0 for evaluation of Magnetic Resonance Spectroscopy data from human brain tumours and other abnormal brain masses
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A hybrid blob-slice model for accurate and efficient detection of fluorescence labeled nuclei in 3D
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webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser
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Improvements to previous algorithms to predict gene structure and isoform concentrations using Affymetrix Exon arrays
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Speeding up tandem mass spectrometry-based database searching by longest common prefix
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Validation and characterization of DNA microarray gene expression data distribution and associated moments
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Sampling the conformation of protein surface residues for flexible protein docking
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iGTP: A software package for large-scale gene tree parsimony analysis
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Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing
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Probabilistic principal component analysis for metabolomic data
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Reticular alignment: A progressive corner-cutting method for multiple sequence alignment
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Knowledge-based biomedical word sense disambiguation: comparison of approaches
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Peptide binding predictions for HLA DR, DP and DQ molecules
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Comparative study of unsupervised dimension reduction techniques for the visualization of microarray gene expression data
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Semi-automatic identification of punching areas for tissue microarray building: the tubular breast cancer pilot study
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Reanalyze unassigned reads in Sanger based metagenomic data using conserved gene adjacency
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Empirical bayes analysis of sequencing-based transcriptional profiling without replicates
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TESTLoc: protein subcellular localization prediction from EST data
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