Volume 8, issue 1, December 2007
488 articles in this issue
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Characterization and simulation of cDNA microarray spots using a novel mathematical model
Authors (first, second and last of 8)
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PARPs database: A LIMS systems for protein-protein interaction data mining or laboratory information management system
Authors (first, second and last of 7)
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Identifying protein complexes directly from high-throughput TAP data with Markov random fields
Authors (first, second and last of 4)
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Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions
Authors (first, second and last of 7)
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On the analysis of glycomics mass spectrometry data via the regularized area under the ROC curve
Authors (first, second and last of 5)
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Penalized likelihood for sparse contingency tables with an application to full-length cDNA libraries
Authors (first, second and last of 4)
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Predicting gene ontology functions from protein's regional surface structures
Authors (first, second and last of 5)
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High-throughput sequence alignment using Graphics Processing Units
Authors (first, second and last of 4)
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A systematic approach to detecting transcription factors in response to environmental stresses
Authors (first, second and last of 4)
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Direct maximum parsimony phylogeny reconstruction from genotype data
Authors (first, second and last of 5)
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Predicting and improving the protein sequence alignment quality by support vector regression
Authors
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A structural analysis of in vitro catalytic activities of hammerhead ribozymes
Authors (first, second and last of 6)
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Statistical learning of peptide retention behavior in chromatographic separations: a new kernel-based approach for computational proteomics
Authors (first, second and last of 4)
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SAT, a flexible and optimized Web application for SSR marker development
Authors (first, second and last of 5)
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Identification of DNA-binding proteins using support vector machines and evolutionary profiles
Authors
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In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation
Authors
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Dendroscope: An interactive viewer for large phylogenetic trees
Authors (first, second and last of 6)
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Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms
Authors (first, second and last of 4)
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Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography
Authors
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GEDI: a user-friendly toolbox for analysis of large-scale gene expression data
Authors (first, second and last of 4)
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The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications
Authors (first, second and last of 4)
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Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana
Authors (first, second and last of 4)
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Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis
Authors (first, second and last of 4)
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Inferring activity changes of transcription factors by binding association with sorted expression profiles
Authors (first, second and last of 4)
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Peptide ligand screening of α-synuclein aggregation modulators by in silico panning
Authors (first, second and last of 4)
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Predicting the phenotypic effects of non-synonymous single nucleotide polymorphisms based on support vector machines
Authors (first, second and last of 6)
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PedGenie: meta genetic association testing in mixed family and case-control designs
Authors (first, second and last of 4)
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Application of a correlation correction factor in a microarray cross-platform reproducibility study
Authors (first, second and last of 8)
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Novel definition files for human GeneChips based on GeneAnnot
Authors (first, second and last of 10)
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Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining
Authors (first, second and last of 4)
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Erratum to: Ringo – an R/Bioconductor package for analyzing ChIP-chip readouts
Authors (first, second and last of 6)
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BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips
Authors (first, second and last of 4)
