Volume 7, supplement issue 2, September 2006

Third Annual MCBIOS Conference. Bioinformatics: A Calculated Discovery

Issue editors

Jonathan D Wren
Stephen Winters-Hilt
Yuriy Gusev
Andrey Ptitsyn

23 articles in this issue

Proceedings of the Third Annual Conference of the MidSouth Computational Biology and Bioinformatics Society

Authors (first, second and last of 4)
- Jonathan D Wren
- Yuriy Gusev
- Stephen Winters-Hilt
- Content type: Introduction
- Open Access
- Published: 26 September 2006
- Article: S1
A Fourier Transformation based Method to Mine Peptide Space for Antimicrobial Activity

Authors (first, second and last of 7)
- Vijayaraj Nagarajan
- Navodit Kaushik
- Youping Deng
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S2
A scalable machine-learning approach to recognize chemical names within large text databases

Authors
- Jonathan D Wren
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S3
Support Vector Machine Implementations for Classification & Clustering

Authors (first, second and last of 4)
- Stephen Winters-Hilt
- Anil Yelundur
- Matthew Landry
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S4
Metric for Measuring the Effectiveness of Clustering of DNA Microarray Expression

Authors
- Raja Loganantharaj
- Satish Cheepala
- John Clifford
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S5
RiboaptDB: A Comprehensive Database of Ribozymes and Aptamers

Authors
- Venkata Thodima
- Mehdi Pirooznia
- Youping Deng
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S6
EGenBio: A Data Management System for Evolutionary Genomics and Biodiversity

Authors (first, second and last of 8)
- Laila A Nahum
- Matthew T Reynolds
- David D Pollock
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S7
Independent Component Analysis-motivated Approach to Classificatory Decomposition of Cortical Evoked Potentials

Authors (first, second and last of 5)
- Tomasz G Smolinski
- Roger Buchanan
- Astrid A Prinz
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S8
Microarray analysis distinguishes differential gene expression patterns from large and small colony Thymidine kinase mutants of L5178Y mouse lymphoma cells

Authors (first, second and last of 6)
- Tao Han
- Jianyong Wang
- Tao Chen
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S9
Permutation test for periodicity in short time series data

Authors
- Andrey A Ptitsyn
- Sanjin Zvonic
- Jeffrey M Gimble
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S10
A method for computing the overall statistical significance of a treatment effect among a group of genes

Authors
- Robert Delongchamp
- Taewon Lee
- Cruz Velasco
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S11
Improving the Performance of SVM-RFE to Select Genes in Microarray Data

Authors
- Yuanyuan Ding
- Dawn Wilkins
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S12
Beyond microarrays: Finding key transcription factors controlling signal transduction pathways

Authors (first, second and last of 5)
- Alexdander Kel
- Nico Voss
- Edgar Wingender
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S13
Hidden Markov Model Variants and their Application

Authors
- Stephen Winters-Hilt
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S14
DNA Molecule Classification Using Feature Primitives

Authors
- Raja Tanveer Iqbal
- Matthew Landry
- Stephen Winters-Hilt
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S15
Analysis of gene expression changes in relation to toxicity and tumorigenesis in the livers of Big Blue transgenic rats fed comfrey (Symphytum officinale)

Authors (first, second and last of 10)
- Nan Mei
- Lei Guo
- Tao Chen
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S16
Improvement in the Reproducibility and Accuracy of DNA Microarray Quantification by Optimizing Hybridization Conditions

Authors (first, second and last of 8)
- Tao Han
- Cathy D Melvin
- James C Fuscoe
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S17
Differential gene expression in mouse primary hepatocytes exposed to the peroxisome proliferator-activated receptor α agonists

Authors (first, second and last of 11)
- Lei Guo
- Hong Fang
- Yvonne P Dragan
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S18
An Automated Method for Rapid Identification of Putative Gene Family Members in Plants

Authors
- Ronald L Frank
- Ajay Mane
- Fikret Ercal
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S19
Gene Expression Profiles Distinguish the Carcinogenic Effects of Aristolochic Acid in Target (Kidney) and Non-target (Liver) Tissues in Rats

Authors (first, second and last of 8)
- Tao Chen
- Lei Guo
- Nan Mei
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S20
Nanopore Detector based analysis of single-molecule conformational kinetics and binding interactions

Authors
- Stephen Winters-Hilt
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S21
Cheminformatics methods for novel nanopore analysis of HIV DNA termini

Authors (first, second and last of 10)
- Stephen Winters-Hilt
- Matthew Landry
- Srikanth Sendamangalam
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S22
GOFFA: Gene Ontology For Functional Analysis – A FDA Gene Ontology Tool for Analysis of Genomic and Proteomic Data

Authors (first, second and last of 5)
- Hongmei Sun
- Hong Fang
- Weida Tong
- Content type: Proceedings
- Open Access
- Published: 26 September 2006
- Article: S23

Volume 7, supplement issue 2, September 2006

Third Annual MCBIOS Conference. Bioinformatics: A Calculated Discovery

Proceedings of the Third Annual Conference of the MidSouth Computational Biology and Bioinformatics Society

A Fourier Transformation based Method to Mine Peptide Space for Antimicrobial Activity

A scalable machine-learning approach to recognize chemical names within large text databases

Support Vector Machine Implementations for Classification & Clustering

Metric for Measuring the Effectiveness of Clustering of DNA Microarray Expression

RiboaptDB: A Comprehensive Database of Ribozymes and Aptamers

EGenBio: A Data Management System for Evolutionary Genomics and Biodiversity

Independent Component Analysis-motivated Approach to Classificatory Decomposition of Cortical Evoked Potentials

Microarray analysis distinguishes differential gene expression patterns from large and small colony Thymidine kinase mutants of L5178Y mouse lymphoma cells

Permutation test for periodicity in short time series data

A method for computing the overall statistical significance of a treatment effect among a group of genes

Improving the Performance of SVM-RFE to Select Genes in Microarray Data

Beyond microarrays: Finding key transcription factors controlling signal transduction pathways

Hidden Markov Model Variants and their Application

DNA Molecule Classification Using Feature Primitives

Analysis of gene expression changes in relation to toxicity and tumorigenesis in the livers of Big Blue transgenic rats fed comfrey (Symphytum officinale)

Improvement in the Reproducibility and Accuracy of DNA Microarray Quantification by Optimizing Hybridization Conditions

Differential gene expression in mouse primary hepatocytes exposed to the peroxisome proliferator-activated receptor α agonists

An Automated Method for Rapid Identification of Putative Gene Family Members in Plants

Gene Expression Profiles Distinguish the Carcinogenic Effects of Aristolochic Acid in Target (Kidney) and Non-target (Liver) Tissues in Rats

Nanopore Detector based analysis of single-molecule conformational kinetics and binding interactions

Cheminformatics methods for novel nanopore analysis of HIV DNA termini

GOFFA: Gene Ontology For Functional Analysis – A FDA Gene Ontology Tool for Analysis of Genomic and Proteomic Data

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Third Annual MCBIOS Conference. Bioinformatics: A Calculated Discovery

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