A comparison of genotyping-by-sequencing analysis methods on low-coverage crop datasets shows advantages of a new workflow, GB-eaSy
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Volume 18, issue 1, December 2017
448 articles in this issue
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Deep convolutional neural networks for pan-specific peptide-MHC class I binding prediction
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Improved high-dimensional prediction with Random Forests by the use of co-data
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CSmetaPred: a consensus method for prediction of catalytic residues
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Super-delta: a new differential gene expression analysis procedure with robust data normalization
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An integrated meta-analysis approach to identifying medications with potential to alter breast cancer risk through connectivity mapping
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fDETECT webserver: fast predictor of propensity for protein production, purification, and crystallization
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A comprehensive analysis on preservation patterns of gene co-expression networks during Alzheimer’s disease progression
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A biological network-based regularized artificial neural network model for robust phenotype prediction from gene expression data
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MetaGenyo: a web tool for meta-analysis of genetic association studies
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Canary: an atomic pipeline for clinical amplicon assays
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pyAmpli: an amplicon-based variant filter pipeline for targeted resequencing data
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Redundancy analysis allows improved detection of methylation changes in large genomic regions
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Diverse effects of distance cutoff and residue interval on the performance of distance-dependent atom-pair potential in protein structure prediction
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Bayesian estimation of scaled mutation rate under the coalescent: a sequential Monte Carlo approach
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A comparison of graph- and kernel-based –omics data integration algorithms for classifying complex traits
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CONSTAX: a tool for improved taxonomic resolution of environmental fungal ITS sequences
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Chromosome structures: reduction of certain problems with unequal gene content and gene paralogs to integer linear programming
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Explorative visual analytics on interval-based genomic data and their metadata
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Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations
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A common base method for analysis of qPCR data and the application of simple blocking in qPCR experiments
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Decontaminating eukaryotic genome assemblies with machine learning
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PON-SC – program for identifying steric clashes caused by amino acid substitutions
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A proximity-based graph clustering method for the identification and application of transcription factor clusters
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ImageJ2: ImageJ for the next generation of scientific image data
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DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data
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DBNorm: normalizing high-density oligonucleotide microarray data based on distributions
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Modeling, validation and verification of three-dimensional cell-scaffold contacts from terabyte-sized images
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Detecting transitions in protein dynamics using a recurrence quantification analysis based bootstrap method
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A modified GC-specific MAKER gene annotation method reveals improved and novel gene predictions of high and low GC content in Oryza sativa
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Software for rapid time dependent ChIP-sequencing analysis (TDCA)
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VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites
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BoolFilter: an R package for estimation and identification of partially-observed Boolean dynamical systems
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HashClone: a new tool to quantify the minimal residual disease in B-cell lymphoma from deep sequencing data
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MVQTLCIM: composite interval mapping of multivariate traits in a hybrid F1 population of outbred species
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Unsupervised gene selection using biological knowledge : application in sample clustering
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ADAGE signature analysis: differential expression analysis with data-defined gene sets
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Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data
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Fast batch searching for protein homology based on compression and clustering
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Synima: a Synteny imaging tool for annotated genome assemblies
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Integration of RNA-Seq data with heterogeneous microarray data for breast cancer profiling
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Brain medical image diagnosis based on corners with importance-values
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Swellix: a computational tool to explore RNA conformational space
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bcROCsurface: an R package for correcting verification bias in estimation of the ROC surface and its volume for continuous diagnostic tests
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ANAT 2.0: reconstructing functional protein subnetworks
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dbMDEGA: a database for meta-analysis of differentially expressed genes in autism spectrum disorder
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GPU-based detection of protein cavities using Gaussian surfaces
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