InDel marker detection by integration of multiple softwares using machine learning techniques
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Volume 17, issue 1, December 2016
392 articles in this issue
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Evaluating tools for transcription factor binding site prediction
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UQlust: combining profile hashing with linear-time ranking for efficient clustering and analysis of big macromolecular data
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Block network mapping approach to quantitative trait locus analysis
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acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
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Efficient randomization of biological networks while preserving functional characterization of individual nodes
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Robust differential expression analysis by learning discriminant boundary in multi-dimensional space of statistical attributes
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COUSCOus: improved protein contact prediction using an empirical Bayes covariance estimator
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SwitchFinder – a novel method and query facility for discovering dynamic gene expression patterns
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Prior knowledge guided eQTL mapping for identifying candidate genes
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Microbial phenomics information extractor (MicroPIE): a natural language processing tool for the automated acquisition of prokaryotic phenotypic characters from text sources
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PROPER: global protein interaction network alignment through percolation matching
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Robust multi-group gene set analysis with few replicates
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Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms
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SurvivalGWAS_Power: a user friendly tool for power calculations in pharmacogenetic studies with “time to event” outcomes
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Development of a group contribution method for estimating free energy of peptides in a dodecane-water system via molecular dynamic simulations
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SCIFIO: an extensible framework to support scientific image formats
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Finding an appropriate equation to measure similarity between binary vectors: case studies on Indonesian and Japanese herbal medicines
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The role of nucleotide composition in premature termination codon recognition
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PCAN: phenotype consensus analysis to support disease-gene association
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ConEVA: a toolbox for comprehensive assessment of protein contacts
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Integrating mean and variance heterogeneities to identify differentially expressed genes
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Comparison of different statistical approaches for urinary peptide biomarker detection in the context of coronary artery disease
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DeepQA: improving the estimation of single protein model quality with deep belief networks
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STON: exploring biological pathways using the SBGN standard and graph databases
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Predicting the recurrence of noncoding regulatory mutations in cancer
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MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing
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The Lair: a resource for exploratory analysis of published RNA-Seq data
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MetaMIS: a metagenomic microbial interaction simulator based on microbial community profiles
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LBSizeCleav: improved support vector machine (SVM)-based prediction of Dicer cleavage sites using loop/bulge length
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A new method of finding groups of coexpressed genes and conditions of coexpression
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FluxFix: automatic isotopologue normalization for metabolic tracer analysis
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ampliMethProfiler: a pipeline for the analysis of CpG methylation profiles of targeted deep bisulfite sequenced amplicons
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variancePartition: interpreting drivers of variation in complex gene expression studies
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SPECtre: a spectral coherence-based classifier of actively translated transcripts from ribosome profiling sequence data
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Clustering of disulfide-rich peptides provides scaffolds for hit discovery by phage display: application to interleukin-23
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A statistical model for the analysis of beta values in DNA methylation studies
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Most of the tight positional conservation of transcription factor binding sites near the transcription start site reflects their co-localization within regulatory modules
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Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building
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Protein ligand-specific binding residue predictions by an ensemble classifier
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Bioimage classification with subcategory discriminant transform of high dimensional visual descriptors
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Comments on: fold change rank ordering statistics: a new method for detecting differentially expressed genes
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GEN3VA: aggregation and analysis of gene expression signatures from related studies
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SABRE: a method for assessing the stability of gene modules in complex tissues and subject populations
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Feature-based classification of human transcription factors into hypothetical sub-classes related to regulatory function
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DASP3: identification of protein sequences belonging to functionally relevant groups
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