Volume 15, supplement issue 9, September 2014

Proceedings of the Fourth Annual RECOMB Satellite Workshop on Massively Parallel Sequencing (RECOMB-Seq 2014)

Issue editors

Mihai Pop
Ali Bashir

16 articles in this issue

Assembly-free genome comparison based on next-generation sequencing reads and variable length patterns

Authors
- Matteo Comin
- Michele Schimd
- Content type: Proceedings
- Open Access
- Published: 10 September 2014
- Article: S1
SWAP-Assembler: scalable and efficient genome assembly towards thousands of cores

Authors (first, second and last of 5)
- Jintao Meng
- Bingqiang Wang
- Pavan Balaji
- Content type: Proceedings
- Open Access
- Published: 10 September 2014
- Article: S2
Piecing the puzzle together: a revisit to transcript reconstruction problem in RNA-seq

Authors
- Yan Huang
- Yin Hu
- Jinze Liu
- Content type: Proceedings
- Open Access
- Published: 10 September 2014
- Article: S3
Near-optimal assembly for shotgun sequencing with noisy reads

Authors
- Ka-Kit Lam
- Asif Khalak
- David Tse
- Content type: Proceedings
- Open Access
- Published: 10 September 2014
- Article: S4
On the complexity of Minimum Path Cover with Subpath Constraints for multi-assembly

Authors
- Romeo Rizzi
- Alexandru I Tomescu
- Veli Mäkinen
- Content type: Proceedings
- Open Access
- Published: 10 September 2014
- Article: S5
BADGE: A novel Bayesian model for accurate abundance quantification and differential analysis of RNA-Seq data

Authors (first, second and last of 5)
- Jinghua Gu
- Xiao Wang
- Jianhua Xuan
- Content type: Proceedings
- Open Access
- Published: 10 September 2014
- Article: S6
Fast lossless compression via cascading Bloom filters

Authors
- Roye Rozov
- Ron Shamir
- Eran Halperin
- Content type: Proceedings
- Open Access
- Published: 10 September 2014
- Article: S7
Gene finding in metatranscriptomic sequences

Authors
- Wazim Mohammed Ismail
- Yuzhen Ye
- Haixu Tang
- Content type: Proceedings
- Open Access
- Published: 10 September 2014
- Article: S8
ILP-based maximum likelihood genome scaffolding

Authors (first, second and last of 4)
- James Lindsay
- Hamed Salooti
- Alex Zelikovsky
- Content type: Proceedings
- Open Access
- Published: 10 September 2014
- Article: S9
CASPER: context-aware scheme for paired-end reads from high-throughput amplicon sequencing

Authors
- Sunyoung Kwon
- Byunghan Lee
- Sungroh Yoon
- Content type: Proceedings
- Open Access
- Published: 10 September 2014
- Article: S10
PuFFIN - a parameter-free method to build nucleosome maps from paired-end reads

Authors (first, second and last of 4)
- Anton Polishko
- Evelien M Bunnik
- Stefano Lonardi
- Content type: Proceedings
- Open Access
- Published: 10 September 2014
- Article: S11
ARYANA: Aligning Reads by Yet Another Approach

Authors (first, second and last of 5)
- Milad Gholami
- Aryan Arbabi
- Mehdi Sadeghi
- Content type: Proceedings
- Open Access
- Published: 10 September 2014
- Article: S12
Ensemble analysis of adaptive compressed genome sequencing strategies

Authors
- Zeinab Taghavi
- Content type: Proceedings
- Open Access
- Published: 10 September 2014
- Article: S13
A better sequence-read simulator program for metagenomics

Authors (first, second and last of 5)
- Stephen Johnson
- Brett Trost
- Anthony Kusalik
- Content type: Proceedings
- Open Access
- Published: 10 September 2014
- Article: S14
ProbeAlign: incorporating high-throughput sequencing-based structure probing information into ncRNA homology search

Authors
- Ping Ge
- Cuncong Zhong
- Shaojie Zhang
- Content type: Proceedings
- Open Access
- Published: 10 September 2014
- Article: S15
Detecting epigenetic motifs in low coverage and metagenomics settings

Authors (first, second and last of 4)
- Noam D Beckmann
- Sashank Karri
- Ali Bashir
- Content type: Proceedings
- Open Access
- Published: 10 September 2014
- Article: S16

Volume 15, supplement issue 9, September 2014

Proceedings of the Fourth Annual RECOMB Satellite Workshop on Massively Parallel Sequencing (RECOMB-Seq 2014)

Assembly-free genome comparison based on next-generation sequencing reads and variable length patterns

SWAP-Assembler: scalable and efficient genome assembly towards thousands of cores

Piecing the puzzle together: a revisit to transcript reconstruction problem in RNA-seq

Near-optimal assembly for shotgun sequencing with noisy reads

On the complexity of Minimum Path Cover with Subpath Constraints for multi-assembly

BADGE: A novel Bayesian model for accurate abundance quantification and differential analysis of RNA-Seq data

Fast lossless compression via cascading Bloom filters

Gene finding in metatranscriptomic sequences

ILP-based maximum likelihood genome scaffolding

CASPER: context-aware scheme for paired-end reads from high-throughput amplicon sequencing

PuFFIN - a parameter-free method to build nucleosome maps from paired-end reads

ARYANA: Aligning Reads by Yet Another Approach

Ensemble analysis of adaptive compressed genome sequencing strategies

A better sequence-read simulator program for metagenomics

ProbeAlign: incorporating high-throughput sequencing-based structure probing information into ncRNA homology search

Detecting epigenetic motifs in low coverage and metagenomics settings

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Volume 15, supplement issue 9, September 2014

Proceedings of the Fourth Annual RECOMB Satellite Workshop on Massively Parallel Sequencing (RECOMB-Seq 2014)

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