Volume 15, issue 1, December 2014
423 articles in this issue
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APP: an Automated Proteomics Pipeline for the analysis of mass spectrometry data based on multiple open access tools
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FogBank: a single cell segmentation across multiple cell lines and image modalities
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WEBnm@ v2.0: Web server and services for comparing protein flexibility
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A framework for feature extraction from hospital medical data with applications in risk prediction
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BitTorious: global controlled genomics data publication, research and archiving via BitTorrent extensions
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Prediction of plant pre-microRNAs and their microRNAs in genome-scale sequences using structure-sequence features and support vector machine
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An integrated network visualization framework towards metabolic engineering applications
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Prediction of piRNAs using transposon interaction and a support vector machine
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JRC GMO-Matrix: a web application to support Genetically Modified Organisms detection strategies
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Unique features of apicoplast DNA gyrases from Toxoplasma gondii and Plasmodium falciparum
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Interactive visual exploration of overlapping similar structures for three-dimensional microscope images
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EPMLR: sequence-based linear B-cell epitope prediction method using multiple linear regression
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Identification of metabolites from 2D 1H-13C HSQC NMR using peak correlation plots
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Mammalian transcriptional hotspots are enriched for tissue specific enhancers near cell type specific highly expressed genes and are predicted to act as transcriptional activator hubs
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Predicting breast cancer using an expression values weighted clinical classifier
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Identifying target processes for microbial electrosynthesis by elementary mode analysis
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DFBAlab: a fast and reliable MATLAB code for dynamic flux balance analysis
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Kiwi: a tool for integration and visualization of network topology and gene-set analysis
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A statistical approach to quantification of genetically modified organisms (GMO) using frequency distributions
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CLAST: CUDA implemented large-scale alignment search tool
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Methodology for the inference of gene function from phenotype data
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ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs
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QUDeX-MS: hydrogen/deuterium exchange calculation for mass spectra with resolved isotopic fine structure
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MCMC implementation of the optimal Bayesian classifier for non-Gaussian models: model-based RNA-Seq classification
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Exact reconstruction of gene regulatory networks using compressive sensing
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Integrating protein structural dynamics and evolutionary analysis with Bio3D
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solGS: a web-based tool for genomic selection
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Comparative evaluation of gene set analysis approaches for RNA-Seq data
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Pathomx: an interactive workflow-based tool for the analysis of metabolomic data
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CompareSVM: supervised, Support Vector Machine (SVM) inference of gene regularity networks
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MPAgenomics: an R package for multi-patient analysis of genomic markers
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Computational prediction of protein interactions related to the invasion of erythrocytes by malarial parasites
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Meta-eQTL: a tool set for flexible eQTL meta-analysis
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SPoRE: a mathematical model to predict double strand breaks and axis protein sites in meiosis
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Pathway activity inference for multiclass disease classification through a mathematical programming optimisation framework
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VTBuilder: a tool for the assembly of multi isoform transcriptomes
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Linear-time computation of minimal absent words using suffix array
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Gene network inference using continuous time Bayesian networks: a comparative study and application to Th17 cell differentiation
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Finding gene regulatory network candidates using the gene expression knowledge base
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Comparison of classification methods that combine clinical data and high-dimensional mass spectrometry data
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AKE - the Accelerated k-mer Exploration web-tool for rapid taxonomic classification and visualization
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Efficient prediction of human protein-protein interactions at a global scale
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Masking as an effective quality control method for next-generation sequencing data analysis
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CAR: contig assembly of prokaryotic draft genomes using rearrangements
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Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning
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A meta-learning approach for B-cell conformational epitope prediction
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TE-Tracker: systematic identification of transposition events through whole-genome resequencing
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A simple peak detection and label-free quantitation algorithm for chromatography-mass spectrometry
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