1. Foreword

   • N Srinivasan
   • R Sowdhamini
   • Alok Bhattacharya

   EditorialNotes 13 April 2007 Pages: 1 - 2

2. Simple sequence repeats in mycobacterial genomes

   • Vattipally B Sreenu
   • Pankaj Kumar
   • Hampapathalu A Nagarajaram

   OriginalPaper 13 April 2007 Pages: 3 - 15

3. Sequence and recombination analyses of the geminivirus replication initiator protein

   • T Vadivukarasi
   • K R Girish
   • R Usha

   OriginalPaper 13 April 2007 Pages: 17 - 29

4. A hybrid approach for predicting promiscuous MHC class I restricted T cell epitopes

   • Manoj Bhasin
   • G P S Raghava

   OriginalPaper 13 April 2007 Pages: 31 - 42

5. Genome inventory and analysis of nuclear hormone receptors in Tetraodon nigroviridis

   • Raghu Prasad Rao Metpally
   • Ramakrishnan Vigneshwar
   • Ramanathan Sowdhamini

   OriginalPaper 13 April 2007 Pages: 43 - 50

6. “Pinning strategy”: a novel approach for predicting the backbone structure in terms of protein blocks from sequence

   • A G de Brevern
   • C Etchebest
   • S Hazout

   OriginalPaper 13 April 2007 Pages: 51 - 70

7. ProRegIn: A regularity index for the selection of native-like tertiary structures of proteins

   • Lipi Thukral
   • Sandhya R Shenoy
   • B Jayaram

   OriginalPaper 13 April 2007 Pages: 71 - 81

8. Comparison of sequence-based and structure-based phylogenetic trees of homologous proteins: Inferences on protein evolution

   • S Balaji
   • N Srinivasan

   OriginalPaper 13 April 2007 Pages: 83 - 96

9. SURF’s UP! — Protein classification by surface comparisons

   • Joanna M Sasin
   • Adam Godzik
   • Janusz M Bujnicki

   OriginalPaper 13 April 2007 Pages: 97 - 100

10. Peptide segments in protein-protein interfaces

    • Arumay Pal
    • Pinak Chakrabarti
    • Joël Janin

    OriginalPaper 13 April 2007 Pages: 101 - 111

11. Modelling and simulation of signal transductions in an apoptosis pathway by using timed Petri nets

    • Li Chen
    • Ge Qi-Wei
    • Satoru Miyano

    OriginalPaper 13 April 2007 Pages: 113 - 127

12. Dynamic causal models of neural system dynamics: current state and future extensions

    • Klaas E Stephan
    • Lee M Harrison
    • Karl J Friston

    OriginalPaper 13 April 2007 Pages: 129 - 144

13. Formal TCA cycle description based on elementary actions

    • Pierre Mazière
    • Nicolas Parisey
    • Franck Molina

    OriginalPaper 13 April 2007 Pages: 145 - 155

14. Modelling spatio-temporal interactions within the cell

    • Padmini Rangamani
    • Ravi Iyengar

    OriginalPaper 13 April 2007 Pages: 157 - 167

15. Integrative content-driven concepts for bioinformatics “beyond the cell”

    • Edgar Wingender
    • Torsten Crass
    • Anatolij P Potapov

    OriginalPaper 13 April 2007 Pages: 169 - 180