Volume 20, issue 1, December 2023
56 articles in this issue
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Quantitative proteomics analysis based on data-independent acquisition reveals the effect of Shenling Baizhu powder (SLP) on protein expression in MAFLD rat liver tissue
Authors (first, second and last of 7)
- Sufei Song
- Jixian Zheng
- Tao Liu
- Content type: Research
- Open Access
- Published: 01 December 2023
- Article: 55
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Proteomic analysis of chromophobe renal cell carcinoma and benign renal oncocytoma biopsies reveals shared metabolic dysregulation
Authors (first, second and last of 9)
- Luis B. Carvalho
- Susana Jorge
- José L. Capelo
- Content type: Research
- Open Access
- Published: 28 November 2023
- Article: 54
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Validation of the novel GLAS algorithm as an aid in the detection of liver fibrosis and cirrhosis based on GP73, LG2m, age, and sex
Authors (first, second and last of 23)
- Philip M. Hemken
- Xuzhen Qin
- Gerard J. Davis
- Content type: Research
- Open Access
- Published: 28 November 2023
- Article: 53
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Development of a predictive model to distinguish prostate cancer from benign prostatic hyperplasia by integrating serum glycoproteomics and clinical variables
Authors (first, second and last of 11)
- Caterina Gabriele
- Federica Aracri
- Marco Gaspari
- Content type: Research
- Open Access
- Published: 21 November 2023
- Article: 52
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Comparison of in-gel and in-solution proteolysis in the proteome profiling of organ perfusion solutions
Authors (first, second and last of 6)
- Corinna M. Snashall
- Chris W. Sutton
- Sadr ul Shaheed
- Content type: Methodology
- Open Access
- Published: 15 November 2023
- Article: 51
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A pathway activity-based proteomic classifier stratifies prostate tumors into two subtypes
Authors (first, second and last of 8)
- Rui Sun
- Lingling Tan
- Tiannan Guo
- Content type: Research
- Open Access
- Published: 11 November 2023
- Article: 50
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Candidate biomarkers for treatment benefit from sunitinib in patients with advanced renal cell carcinoma using mass spectrometry-based (phospho)proteomics
Authors (first, second and last of 10)
- Hanneke van der Wijngaart
- Robin Beekhof
- Mariette Labots
- Content type: Research
- Open Access
- Published: 08 November 2023
- Article: 49
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Change of histone H3 lysine 14 acetylation stoichiometry in human monocyte derived macrophages as determined by MS-based absolute targeted quantitative proteomic approach: HIV infection and methamphetamine exposure
Authors (first, second and last of 7)
- Katarzyna Macur
- Andrew Schissel
- Pawel Ciborowski
- Content type: Research
- Open Access
- Published: 25 October 2023
- Article: 48
This is part of 2 collections: -
Mass spectrometry quantifies target engagement for a KRASG12C inhibitor in FFPE tumor tissue
Authors (first, second and last of 8)
- Andrew G. Chambers
- David C. Chain
- Yeoun Jin Kim
- Content type: Research
- Open Access
- Published: 25 October 2023
- Article: 47
This is part of 2 collections: -
Comment on “Cerebrospinal fluid camk2a levels at baseline predict long-term progression in multiple sclerosis. Clinical Proteomics”
Authors
- Fereshteh Behdarvand Dehkordi
- Mohammad Chehelgerdi
- Content type: Correspondence
- Open Access
- Published: 25 October 2023
- Article: 46
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Glial cell proteome using targeted quantitative methods for potential multi-diagnostic biomarkers
Authors (first, second and last of 11)
- Narae Kang
- Hyun Jeong Oh
- Jonghwa Jin
- Content type: Research
- Open Access
- Published: 24 October 2023
- Article: 45
This is part of 2 collections: -
Validation of ANG-1 and P-SEL as biomarkers of post-COVID-19 conditions using data from the Biobanque québécoise de la COVID-19 (BQC-19)
Authors (first, second and last of 6)
- Eric Yamga
- Antoine Soulé
- Simon Rousseau
- Content type: Correspondence
- Open Access
- Published: 24 October 2023
- Article: 44
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Proteomic analyses reveal cystatin c is a promising biomarker for evaluation of systemic lupus erythematosus
Authors (first, second and last of 6)
- He Huang
- Yukun Zhang
- Yujun Sheng
- Content type: Research
- Open Access
- Published: 18 October 2023
- Article: 43
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Redefining serological diagnostics with immunoaffinity proteomics
Authors
- Jonathan Walter
- Zicki Eludin
- Andrei P. Drabovich
- Content type: Review
- Open Access
- Published: 12 October 2023
- Article: 42
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A large-scale targeted proteomics of serum and tissue shows the utility of classifying high grade and low grade meningioma tumors
Authors (first, second and last of 15)
- Ankit Halder
- Deeptarup Biswas
- Sanjeeva Srivastava
- Content type: Research
- Open Access
- Published: 29 September 2023
- Article: 41
This is part of 2 collections: -
Development of an ID-LC–MS/MS method using targeted proteomics for quantifying cardiac troponin I in human serum
Authors
- Meltem Asicioglu
- Merve Oztug
- Nevin Gul Karaguler
- Content type: Research
- Open Access
- Published: 27 September 2023
- Article: 40
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Identification of potential molecular targets for the treatment of cluster 1 human pheochromocytoma and paraganglioma via comprehensive proteomic characterization
Authors (first, second and last of 6)
- Ondrej Vit
- Pavel Talacko
- Jiri Petrak
- Content type: Research
- Open Access
- Published: 25 September 2023
- Article: 39
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Systematic review of type 1 diabetes biomarkers reveals regulation in circulating proteins related to complement, lipid metabolism, and immune response
Authors (first, second and last of 12)
- Soumyadeep Sarkar
- Emily C. Elliott
- Ernesto S. Nakayasu
- Content type: Review
- Open Access
- Published: 21 September 2023
- Article: 38
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Identification and verification of plasma protein biomarkers that accurately identify an ectopic pregnancy
Authors (first, second and last of 9)
- Lynn A. Beer
- Xiangfan Yin
- Aaron R. Goldman
- Content type: Research
- Open Access
- Published: 15 September 2023
- Article: 37
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Proteome analysis of CD5-positive diffuse large B cell lymphoma FFPE tissue reveals downregulation of DDX3X, DNAJB1, and B cell receptor signaling pathway proteins including BTK and Immunoglobulins
Authors (first, second and last of 8)
- Takuya Hiratsuka
- Shinji Ito
- Tatsuaki Tsuruyama
- Content type: Research
- Open Access
- Published: 13 September 2023
- Article: 36
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New mechanisms and biomarkers of lymph node metastasis in cervical cancer: reflections from plasma proteomics
Authors (first, second and last of 14)
- Sai Han
- Xiaoli Liu
- Youzhong Zhang
- Content type: Research
- Open Access
- Published: 09 September 2023
- Article: 35
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Correction to: Proteomic analysis of human synovial fluid reveals potential diagnostic biomarkers for ankylosing spondylitis
Authors (first, second and last of 10)
- Ji-Hyun Lee
- Jae Hun Jung
- Jong-Seo Kim
- Content type: Correction
- Open Access
- Published: 02 September 2023
- Article: 34
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Cerebrospinal fluid camk2a levels at baseline predict long-term progression in multiple sclerosis
Authors (first, second and last of 11)
- Dorsa Sohaei
- Simon Thebault
- Mark S. Freedman
- Content type: Research
- Open Access
- Published: 29 August 2023
- Article: 33
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Mass spectrometry-based proteomics as an emerging tool in clinical laboratories
Authors
- Alemayehu Godana Birhanu
- Content type: Review
- Open Access
- Published: 26 August 2023
- Article: 32
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Proteomic analysis of 92 circulating proteins and their effects in cardiometabolic diseases
Authors (first, second and last of 32)
- Corinne Carland
- Grace Png
- Themistocles Assimes
- Content type: Research
- Open Access
- Published: 07 August 2023
- Article: 31
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Identification of SARS-CoV-2 biomarkers in saliva by transcriptomic and proteomics analysis
Authors (first, second and last of 8)
- Lina M. Marin
- George S. Katselis
- Walter L. Siqueira
- Content type: Research
- Open Access
- Published: 03 August 2023
- Article: 30
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Proteomic analysis identifies subgroups of patients with active systemic lupus erythematosus
Authors (first, second and last of 12)
- Kevin Y. C. Su
- John A. Reynolds
- the MASTERPLANS and BILAG-BR consortia
- Content type: Research
- Open Access
- Published: 29 July 2023
- Article: 29
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Comparative proteomics analysis in different stages of urothelial bladder cancer for identification of potential biomarkers: highlighted role for antioxidant activity
Authors (first, second and last of 7)
- Samira Tabaei
- Mohammad Reza Haghshenas
- Abbas Ghaderi
- Content type: Research
- Open Access
- Published: 27 July 2023
- Article: 28
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Associations of circulating proteins with lipoprotein profiles: proteomic analyses from the OmniHeart randomized trial and the Atherosclerosis Risk in Communities (ARIC) Study
Authors (first, second and last of 7)
- Hyunju Kim
- Alice H. Lichtenstein
- Casey M. Rebholz
- Content type: Research
- Open Access
- Published: 03 July 2023
- Article: 27
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Development of a rapid and specific MALDI-TOF mass spectrometric assay for SARS-CoV-2 detection
Authors (first, second and last of 7)
- Lydia Kollhoff
- Marc Kipping
- Andrea Sinz
- Content type: Research
- Open Access
- Published: 01 July 2023
- Article: 26
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VCAM-1 complements CA-125 in detecting recurrent ovarian cancer
Authors (first, second and last of 4)
- Jin Song
- Lori J. Sokoll
- Daniel W. Chan
- Content type: Research
- Open Access
- Published: 25 June 2023
- Article: 25
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Identification of ORM1, vWF, SPARC, and PPBP as immune-related proteins involved in immune thrombocytopenia by quantitative LC-MS/MS
Authors (first, second and last of 7)
- Dong-mei Yin
- Dai Yuan
- Ning-ning Shan
- Content type: Research
- Open Access
- Published: 24 June 2023
- Article: 24
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Orthogonal proteomics methods warrant the development of Duchenne muscular dystrophy biomarkers
Authors (first, second and last of 13)
- Camilla Johansson
- Helian Hunt
- Cristina Al-Khalili Szigyarto
- Content type: Research
- Open Access
- Published: 12 June 2023
- Article: 23
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Tailored therapeutic decision of rheumatoid arthritis using proteomic strategies: how to start and when to stop?
Authors (first, second and last of 4)
- Shuo-Fu Chen
- Fu-Chiang Yeh
- Hui-Yin Chang
- Content type: Review
- Open Access
- Published: 10 June 2023
- Article: 22
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Comparative proteomic analysis of glomerular proteins in IgA nephropathy and IgA vasculitis with nephritis
Authors (first, second and last of 11)
- Hajime Kaga
- Hirotoshi Matsumura
- Naoto Takahashi
- Content type: Research
- Open Access
- Published: 13 May 2023
- Article: 21
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The rapid detection of procalcitonin in septic serum using immunoaffinity MALDI chips
Authors (first, second and last of 14)
- Josef Dvorak
- Jana Novakova
- Petr Pompach
- Content type: Research
- Open Access
- Published: 11 May 2023
- Article: 20
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Proteomic signature associated with chronic kidney disease (CKD) progression identified by data-independent acquisition mass spectrometry
Authors (first, second and last of 8)
- Carlos R. Ramírez Medina
- Ibrahim Ali
- Nophar Geifman
- Content type: Research
- Open Access
- Published: 20 April 2023
- Article: 19
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Quantitative proteomics analysis in small cell carcinoma of cervix reveals novel therapeutic targets
Authors (first, second and last of 5)
- Haifeng Qiu
- Ning Su
- Jing Li
- Content type: Research
- Open Access
- Published: 08 April 2023
- Article: 18
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Mitochondria and cytochrome components released into the plasma of severe COVID-19 and ICU acute respiratory distress syndrome patients
Authors (first, second and last of 12)
- Zhuo Zhen Chen
- Lloyd Johnson
- John G. Marshall
- Content type: Research
- Open Access
- Published: 08 April 2023
- Article: 17
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Correction to: Phospho-heavy-labeled-spiketide FAIMS stepped-CV DDA (pHASED) provides real-time phosphoproteomics data to aid in cancer drug selection
Authors (first, second and last of 18)
- Dilana E. Staudt
- Heather C. Murray
- Matthew D. Dun
- Content type: Correction
- Open Access
- Published: 08 April 2023
- Article: 16
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Label-free quantitative proteomics reveals aberrant expression levels of LRG, C9, FN, A1AT and AGP1 in the plasma of patients with colorectal cancer
Authors (first, second and last of 11)
- Chris Verathamjamras
- Juthamard Chantaraamporn
- Voraratt Champattanachai
- Content type: Research
- Open Access
- Published: 06 April 2023
- Article: 15
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An optimized workflow for MS-based quantitative proteomics of challenging clinical bronchoalveolar lavage fluid (BALF) samples
Authors (first, second and last of 10)
- Danielle O. Weise
- Monica E. Kruk
- Timothy J. Griffin
- Content type: Methodology
- Open Access
- Published: 02 April 2023
- Article: 14
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Proteomic characteristics and diagnostic potential of exhaled breath particles in patients with COVID-19
Authors (first, second and last of 7)
- Gabriel Hirdman
- Embla Bodén
- Sandra Lindstedt
- Content type: Research
- Open Access
- Published: 27 March 2023
- Article: 13
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Discovery of novel glioma serum biomarkers by proximity extension assay
Authors (first, second and last of 10)
- Atefeh Ghorbani
- Lisa M. Avery
- Ioannis Prassas
- Content type: Research
- Open Access
- Published: 24 March 2023
- Article: 12
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Proteomic analysis of sialoliths from calcified, lipid and mixed groups as a source of potential biomarkers of deposit formation in the salivary glands
Authors (first, second and last of 6)
- Natalia Musiał
- Aleksandra Bogucka
- Paulina Czaplewska
- Content type: Research
- Open Access
- Published: 22 March 2023
- Article: 11
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Quantitative proteomics identifies and validates urinary biomarkers of rhabdomyosarcoma in children
Authors (first, second and last of 10)
- Na Xu
- Yuncui Yu
- Xiaoli Ma
- Content type: Research
- Open Access
- Published: 14 March 2023
- Article: 10
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Potential biomarker proteins for aspiration pneumonia detected by shotgun proteomics using buccal mucosa samples: a cross-sectional case–control study
Authors (first, second and last of 11)
- Kohei Ogura
- Maho Endo
- Junko Sugama
- Content type: Research
- Open Access
- Published: 09 March 2023
- Article: 9
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Proteomic analysis identifies dysregulated proteins and associated molecular pathways in a cohort of gallbladder cancer patients of African ancestry
Authors (first, second and last of 7)
- Pavan Baichan
- Previn Naicker
- Ekene Emmanuel Nweke
- Content type: Research
- Open Access
- Published: 01 March 2023
- Article: 8
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Changes of serum IgG glycosylation patterns in rheumatoid arthritis
Authors (first, second and last of 10)
- Xiaoyue Deng
- Xiaomin Liu
- Chaojun Hu
- Content type: Research
- Open Access
- Published: 21 February 2023
- Article: 7