1. Algebraic Methods in Phylogenetics

   • Marta Casanellas
   • John A. Rhodes

   Preface 19 December 2018 Pages: 313 - 315

2. Dimensions of Group-Based Phylogenetic Mixtures

   • Hector Baños
   • Nathaniel Bushek
   • Robert Walker

   Special Issue: Algebraic Methods in Phylogenetics 17 September 2018 Pages: 316 - 336

   

3. Maximum Likelihood Estimation of Symmetric Group-Based Models via Numerical Algebraic Geometry

   • Dimitra Kosta
   • Kaie Kubjas

   Special Issue: Algebraic Methods in Phylogenetics Open access 24 October 2018 Pages: 337 - 360

   

4. Lie-Markov Models Derived from Finite Semigroups

   • Jeremy G. Sumner
   • Michael D. Woodhams

   Special Issue: Algebraic Methods in Phylogenetics 02 August 2018 Pages: 361 - 383

5. On the Number of Non-equivalent Ancestral Configurations for Matching Gene Trees and Species Trees

   • Filippo Disanto
   • Noah A. Rosenberg

   Special Issue: Algebraic Methods in Phylogenetics 14 September 2017 Pages: 384 - 407

   

6. Identifiability and Reconstructibility of Species Phylogenies Under a Modified Coalescent

   • Colby Long
   • Laura Kubatko

   Special Issue: Algebraic Methods in Phylogenetics 20 June 2018 Pages: 408 - 430

   

7. Identifiability of Phylogenetic Parameters from k-mer Data Under the Coalescent

   • Chris Durden
   • Seth Sullivant

   Special Issue: Algebraic Methods in Phylogenetics 01 February 2018 Pages: 431 - 451

   

8. Mathematical and Simulation-Based Analysis of the Behavior of Admixed Taxa in the Neighbor-Joining Algorithm

   • Jaehee Kim
   • Filippo Disanto
   • Noah A. Rosenberg

   Special Issue: Algebraic Methods in Phylogenetics 06 June 2018 Pages: 452 - 493

   

9. Identifying Species Network Features from Gene Tree Quartets Under the Coalescent Model

   • Hector Baños

   Special Issue: Algebraic Methods in Phylogenetics 09 August 2018 Pages: 494 - 534

   

10. Maximum Likelihood Estimates of Rearrangement Distance: Implementing a Representation-Theoretic Approach

    • Venta Terauds
    • Jeremy Sumner

    Special Issue: Algebraic Methods in Phylogenetics 27 September 2018 Pages: 535 - 567

    

11. Tropical Principal Component Analysis and Its Application to Phylogenetics

    • Ruriko Yoshida
    • Leon Zhang
    • Xu Zhang

    Special Issue: Algebraic Methods in Phylogenetics 11 September 2018 Pages: 568 - 597

    

12. Phylogenetic Flexibility via Hall-Type Inequalities and Submodularity

    • Katharina T. Huber
    • Vincent Moulton
    • Mike Steel

    Special Issue: Algebraic Methods in Phylogenetics Open access 27 March 2018 Pages: 598 - 617

    

13. On the Shapley Value of Unrooted Phylogenetic Trees

    • Kristina Wicke
    • Mareike Fischer

    Special Issue: Algebraic Methods in Phylogenetics 17 January 2018 Pages: 618 - 638