Volume 31, Issue 3-4

Search all Journal of Biological Physics articles

December 2005

Special Issue: Proceedings ICBP-2004

Issue Editor:

Leif Matsson

31 articles in this issue

Preface
Leif Matsson
OriginalPaper Pages: 233 - 234
Completing Our First Decade of Biological Physics Conferences
Leif Matsson
Adrian Parsegian
OriginalPaper Pages: 235 - 239
Extended Abstract: Plateaus and Jumps in Single-Molecule DNA Unzipping Experiments
David R. Nelson
OriginalPaper Pages: 241 - 242
Single Macromolecules: Hierarchic Thermodynamics, Irreversibility and Biological Function
Kenichi Yoshikawa
OriginalPaper Pages: 243 - 248
Targeted Green-Red Photoconversion of EosFP, a Fluorescent Marker Protein
Sergey Ivanchenko
Carlheinz Röcker
G. Ulrich Nienhaus
OriginalPaper Pages: 249 - 259
Determining to Divide: How Do Cells Decide?
Kendall A. Smith
OriginalPaper Pages: 261 - 272
Can We Model DNA at the Mesoscale?
S. Cuesta-López
J. Errami
M. Peyrard
OriginalPaper Pages: 273 - 301
Model of DNA Dynamics and Replication
Leif Matsson
OriginalPaper Pages: 303 - 321
Modeling B–A Transformations of the DNA Double Helix
S. N. Volkov
OriginalPaper Pages: 323 - 337
Dynamic Approach to DNA Breathing
Ralf Metzler
Tobias Ambjörnsson
OriginalPaper Pages: 339 - 350
Dynamic Simulation of Active/Inactive Chromatin Domains
Jens Odenheimer
Gregor Kreth
Dieter W. Heermann
OriginalPaper Pages: 351 - 363
Diffusion of DNA Molecules in Gel at High Electric Fields
P. Pasciak
M. J. Krawczyk
K. Kulakowski
OriginalPaper Pages: 365 - 373
A Nonadiabatic Theory for Ultrafast Catalytic Electron Transfer: A Model for the Photosynthetic Reaction Center
Serge Aubry
Georgios Kopidakis
OriginalPaper Pages: 375 - 402
Decomposition Reaction of Dioxetanone in Firefly Bioluminescence by Computer Experiment
Naohisa Wada
Hironori Sakai
OriginalPaper Pages: 403 - 412
Energy Landscape and Dynamics of Biomolecules Extended Abstract
Hans Frauenfelder
OriginalPaper Pages: 413 - 416
A Spectroscopic Study of Structural Heterogeneity and Carbon Monoxide Binding in Neuroglobin
Karin Nienhaus
G. Ulrich Nienhaus
OriginalPaper Pages: 417 - 432
Protein Surface Dynamics: Interaction with Water and Small Solutes
Ran Friedman
Esther Nachliel
Menachem Gutman
OriginalPaper Pages: 433 - 452
Red Blood Cell Shape and Fluctuations: Cytoskeleton Confinement and ATP Activity
N. Gov
S. A. Safran
OriginalPaper Pages: 453 - 464
Dielectric Properties of Yeast Cells Expressed With the Motor Protein Prestin
John H. Miller Jr.
Dharmakeerthi Nawarathna
William E. Brownell
OriginalPaper Pages: 465 - 475
Gravitational Symmetry Breaking Leads to a Polar Liquid Crystal Phase of Microtubules In Vitro
J. A. Tuszynski
M. V. Sataric
J. M. Dixon
OriginalPaper Pages: 477 - 486
Nonlinear Dynamics of Microtubules: Biophysical Implications
M. V. Sataric
J. A. Tuszynski
OriginalPaper Pages: 487 - 500
Electromagnetic Field of Microtubules: Effects on Transfer of Mass Particles and Electrons
Jiří Pokorný
Jiří Hašek
František Jelínek
OriginalPaper Pages: 501 - 514
Mathematical Modelling of Ca²⁺ Oscillations in Airway Smooth Muscle Cells
Milan Brumen
Aleš Fajmut
Etienne Roux
OriginalPaper Pages: 515 - 524
Lyotropic Ion Channel Current Model Compared with Ising Model
Leif Matsson
Virulh Sa-Yakanit
Santipong Boribarn
OriginalPaper Pages: 525 - 532
The Relation of Different-Scale Membrane Processes Under Nitric Oxide Influence
Nadiya A. Brazhe (Ulyanova)
Liudmila A. Erokhova
Georgy V. Maksimov
OriginalPaper Pages: 533 - 546
The Sleep Cycle Modelled as a Cortical Phase Transition
D. A. Steyn-Ross
Moira L. Steyn-Ross
J. J. Wright
OriginalPaper Pages: 547 - 569
A Computer-Glimpse of the Origin of Life
Christoph Kuhn
OriginalPaper Pages: 571 - 585
Survival Chances of Mutants Starting With One Individual
Christoph Kuhn
OriginalPaper Pages: 587 - 597
Homochirality in Bio-Organic Systems and Glyceraldehyde in the Formose Reaction
S. Toxvaerd
OriginalPaper Pages: 599 - 606
The Possibility of the Formation of Protocells and Their Structural Components on the Basis of the Apatite Matrix and Cocrystallizing Minerals
Eduard Y. Kostetsky
OriginalPaper Pages: 607 - 638
How Nature Modulates Inherent Fluctuations for Biological Self-Organization – The Case of Membrane Fusion
Wokyung Sung
Yong Woon Kim
OriginalPaper Pages: 639 - 644

Volume 31, Issue 3-4

Preface

Completing Our First Decade of Biological Physics Conferences

Extended Abstract: Plateaus and Jumps in Single-Molecule DNA Unzipping Experiments

Single Macromolecules: Hierarchic Thermodynamics, Irreversibility and Biological Function

Targeted Green-Red Photoconversion of EosFP, a Fluorescent Marker Protein

Determining to Divide: How Do Cells Decide?

Can We Model DNA at the Mesoscale?

Model of DNA Dynamics and Replication

Modeling B–A Transformations of the DNA Double Helix

Dynamic Approach to DNA Breathing

Dynamic Simulation of Active/Inactive Chromatin Domains

Diffusion of DNA Molecules in Gel at High Electric Fields

A Nonadiabatic Theory for Ultrafast Catalytic Electron Transfer: A Model for the Photosynthetic Reaction Center

Decomposition Reaction of Dioxetanone in Firefly Bioluminescence by Computer Experiment

Energy Landscape and Dynamics of Biomolecules Extended Abstract

A Spectroscopic Study of Structural Heterogeneity and Carbon Monoxide Binding in Neuroglobin

Protein Surface Dynamics: Interaction with Water and Small Solutes

Red Blood Cell Shape and Fluctuations: Cytoskeleton Confinement and ATP Activity

Dielectric Properties of Yeast Cells Expressed With the Motor Protein Prestin

Gravitational Symmetry Breaking Leads to a Polar Liquid Crystal Phase of Microtubules In Vitro

Nonlinear Dynamics of Microtubules: Biophysical Implications

Electromagnetic Field of Microtubules: Effects on Transfer of Mass Particles and Electrons

Mathematical Modelling of Ca²⁺ Oscillations in Airway Smooth Muscle Cells

Lyotropic Ion Channel Current Model Compared with Ising Model

The Relation of Different-Scale Membrane Processes Under Nitric Oxide Influence

The Sleep Cycle Modelled as a Cortical Phase Transition

A Computer-Glimpse of the Origin of Life

Survival Chances of Mutants Starting With One Individual

Homochirality in Bio-Organic Systems and Glyceraldehyde in the Formose Reaction

The Possibility of the Formation of Protocells and Their Structural Components on the Basis of the Apatite Matrix and Cocrystallizing Minerals

How Nature Modulates Inherent Fluctuations for Biological Self-Organization – The Case of Membrane Fusion

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