Skip to main content

Interactions of Lipid-Oligonucleotide Conjugates with Low-Density Lipoprotein

  • Protocol
Nonviral Vectors for Gene Therapy

Part of the book series: Methods in Molecular Medicine™ ((MIMM,volume 65))

  • 480 Accesses

Abstract

The ability of antisense oligonucleotides to interdict, sequence-specifically, the expression of pathogenic genes affords an exciting new strategy for therapeutic intervention (13). Oligonucleotides with physiological phosphodiester internucleotide bonds are rapidly degraded, predominantly by exonucleases. Numerous oligonucleotide analogs have therefore been synthesized to confer resistance toward nuclease activity (3). The phosphorothioate analog is the most extensively studied, and phosphorothioate oligodeoxynucleotides have been shown to be potent inhibitors of the expression of their target genes in vitro and in vivo (1,3). However, phosphorothioate oligodeoxynucleotides also bind avidly and nonspecifically to proteins, thus provoking a variety of non-antisense effects (4). Oligonucleotide analogs that do not bind to proteins are therefore expected to display less nonantisense side effects. However, protein binding also affects the in vivo disposition of oligonucleotides. Nonphosphorothioate oligonucelotide analogs generally do not bind to serum proteins, and are therefore rapidly cleared from the circulation, protein-bound phosphorothioate oligodeoxynucelotides circulate much longer (5,6).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Akhtar S. and Agrawal S. (1997) In vivo studies with antisense oligonucleotides. Trends Pharm. Sci. 18, 12–18.

    Article  CAS  PubMed  Google Scholar 

  2. Branch A. D. (1996) Hitchhiker’s guide to antisense and nonantisense biochemical pathways. Hepatology 24, 1517–1529.

    Article  CAS  PubMed  Google Scholar 

  3. Szymkowski D. E. (1996) Developing antisense oligonucleotides from the laboratory to the clinic. Drug Discov. Today 1, 415–428.

    Article  CAS  Google Scholar 

  4. Stein C. A. (1995). Does antisense exist? Nature Med. 1, 1119–1121.

    Article  CAS  PubMed  Google Scholar 

  5. Sands H., Gorey-Feret L. J., Cocuzza A, J., Hobbs F. W., Chidester D., and Trainor G. L. (1994) Biodistribution and metabolism of internally 3H-labeled oligonucleotides. I. Comparison of a phosphodiester and a phosphorothioate. Mol. Pharmacol. 45, 932–943.

    CAS  PubMed  Google Scholar 

  6. Nolting A., DeLong R. K., Fisher M. H., Wickstrom E., Pollack G. M., Juliano R. L., and Brouwer K. L. (1997) Hepatic distribution and clearance of antisense oligonucleotides in the isloated perfused rat liver. Pharm. Res. 14, 516–521.

    Article  CAS  PubMed  Google Scholar 

  7. Brown M. S. and Goldstein J. L. (1986) A receptor-mediated pathway for cholesterol homeostasis. Science 232, 34–47.

    Article  CAS  PubMed  Google Scholar 

  8. Harkes L. and van Berkel T. J. C. (1983) Cellular localization of the receptor-dependent and receptor-independent uptake of human LDL in the liver of normal and 17 alpha-ethinyl estradiol-treated rats. FEBS Lett. 154, 75–80.

    Article  CAS  PubMed  Google Scholar 

  9. Firestone R. A. (1994) Low-density lipoprotein as a vehicle for targeting antitumor compounds to cancer cells. Bioconjugate Chem. 5, 105–113.

    Article  CAS  Google Scholar 

  10. Majello B., Kenyon L. C., and Dalla-Favera R. (1986) Human c-myb protooncogene: nucleotide sequence of cDNA and organization of the genomic locus. Proc. Nat. Acad. Sci. USA 83, 9636–9640.

    Article  CAS  PubMed  Google Scholar 

  11. Rump E. T., de Vrueh R. L. A., Sliedregt L. A. J. M., Biessen E. A. L., van Berkel T. J. C., and Bijsterbosch M. K. (1998) Preparation of conjugates of oligonucleotides and lipid structures, and their interaction with low-density lipoprotein. Bioconjugate Chem. 9, 341–349.

    Article  CAS  Google Scholar 

  12. Graham M. J., Freier S. M., Crooke R. M., Ecker D. J., Maslova R. N., and Lesnik E. A. (1993) Tritium labeling of antisense oligonucleotides by exchange with tritiated water. Nucleic Acids Res. 21, 3737–3743.

    Article  CAS  PubMed  Google Scholar 

  13. Bijsterbosch M. K., Rump E. T., De Vrueh R. L. A., Dorland R., Van Veghel R., Tivel K. L., et al. (2000) Modulation of plasma protein binding and in vivo liver cell uptake of phosphorothioate oligodeoxynucleotides by cholesterol modification. Nucleic Acids Res. 28, 2717–2725.

    Article  CAS  PubMed  Google Scholar 

  14. Manoharan M., Tivel K. L., and Cook P. D. (1995) Lipidic nucleic acids. Tetrahedron Lett. 36, 3651–3654.

    Article  CAS  Google Scholar 

  15. Firestone R. A., Pisano J. M., Falck J. R., McPaul M. M., and Krieger M. (1984) Selective delivery of cytotoxic compounds to cells by the LDL pathway. J. Med. Chem. 27, 1037–1043.

    Article  CAS  PubMed  Google Scholar 

  16. Rensen P. C. N., Herijgers N., Netscher M. H., Meskers S. C. J., van Eck M., and van Berkel T. J. C. (1997) Particle size determines the specificity of apolipoprotein E-containing triglyceride-rich emulsions for the LDL receptor versus hepatic remnant receptor in vivo. J. Lipid Res. 38, 1070–1084.

    CAS  Google Scholar 

  17. Rensen P. C. N., Schiffelers R. M., Versluis A. J., Bijsterbosch M. K., van Kuijk-Meuwissen M. E. M. J., and van Berkel T. J. C. (1997) Human recombinant apolipoprotein E-enriched liposomes can mimic low density lipoproteins as carriers for the site-specific delivery of anti-tumour agents. Mol. Pharmacol. 52, 445–454.

    CAS  PubMed  Google Scholar 

  18. Redgrave T. G., Roberts D. L. K., and West C. E. (1975) Separation of plasma lipoproteins by density gradient ultracentrifugation. Anal. Biochem. 65, 42–49.

    Article  CAS  PubMed  Google Scholar 

  19. McFarlane A. S. (1958) Efficient trace-labelling of proteins with iodine. Nature 182, 53–54.

    Article  CAS  PubMed  Google Scholar 

  20. Lowry O. H., Rosebrough N. J., Farr A. L., and Randall R. J. (1951) Protein measurement with the Folin phenol reagent. J. Biol. Chem. 193, 265–275.

    CAS  PubMed  Google Scholar 

  21. Chen S. H., Yang C. Y., Chen P. F., Setzer D., Tanimuara M., Li W. H., Gotto A. M., Jr., and Chan L. (1986) The complete cDNA and amino acid sequence of human apolipoprotein B-100. J. Biol. Chem. 261, 12,918–12,921.

    CAS  PubMed  Google Scholar 

  22. Cossum P. A., Sasmor H., Dellinger D., Truong L., Cummins L., Owens S. R., et al. (1993) Disposition of the C-14-labeled phosphorothioate oligonucleotide ISIS 2105 after intravenous administration to rats. J. Pharmacol. Exp. Ther. 267, 1181–1190.

    CAS  PubMed  Google Scholar 

  23. Srinivasan S. K., Tewary H. K., and Iversen P. L. (1995) Characterization of binding sites, extent of binding, and drug interactions of oligonucleotides with albumin. Antisense Res. Dev. 5, 131–139.

    CAS  PubMed  Google Scholar 

  24. Bijsterbosch M. K., Duursma A. M., Bouma J. M. W., and Gruber M. (1981) The plasma volume of the Wistar rat in relation to the body weight. Experientia 37, 381–382.

    Article  CAS  PubMed  Google Scholar 

  25. Rump E. T., de Vrueh R. L. A., Manoharan M., Waarlo I. H. E., van Veghel R., Biessen E. A. L., van Berkel T. J. C., and Bijsterbosch M. K. (2000) modification of the plasma clearance and liver uptake of steroid ester-conjugated oligodeoxynucleotides by association with (lactosylated) low-density lipoprotein. Biochem. Pharmacol. 59, 1407–1416.

    Article  CAS  PubMed  Google Scholar 

  26. Biessen E. A. L., Vietsch H., Kuiper J., Bijsterbosch M. K., and van Berkel T. J. C. (1998) Liver uptake of phosphodiester oligodeoxynucleotides is mediated by scavenger receptors. Mol. Pharmacol. 53, 262–269.

    CAS  PubMed  Google Scholar 

  27. Summerton J. (1999) Morpholino antisense oligomers: the case for an RNAse H-independent structural type. Biochim. Biophys. Acta 1489, 141–158.

    CAS  PubMed  Google Scholar 

  28. Larsen H. J., Bentin T., and Nielsen P. E. (1999) Antisense properties of peptide nucleic acid. Biochim. Biophys. Acta 1489, 159–166.

    CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2001 Humana Press Inc.

About this protocol

Cite this protocol

Rump, E.T., Biessen, E.A.L., van Berkel, T.J.C., Bijsterbosch, M.K. (2001). Interactions of Lipid-Oligonucleotide Conjugates with Low-Density Lipoprotein. In: Findeis, M.A. (eds) Nonviral Vectors for Gene Therapy. Methods in Molecular Medicine™, vol 65. Humana Press. https://doi.org/10.1385/1-59259-139-6:89

Download citation

  • DOI: https://doi.org/10.1385/1-59259-139-6:89

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-712-0

  • Online ISBN: 978-1-59259-139-8

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics