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PC/GENE: Searches for Functional Sites in Nucleic Acids and Proteins

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Computer Analysis of Sequence Data

Part of the book series: Methods in Molecular Biology ((MIMB,volume 24))

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Abstract

The PC/GENE package contains several programs that scan nucleic acid sequences for predefined functional sites or sequence motifs. These include EUKPROM, which searches for a TATA-box, a Cap signal, a CCAAT-box, and a GC-box. Also included is SIGNAL which searches for splice junctions, eukaryotic ribosome binding sites, prokaryotic ribosome binding sites, and E. coli promoter sequences.

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References

  1. Bucher P. (1990) Weight matrix descriptions of four eukaryottc RNA poly-merase-II promoter elements derived from 502 unrelated promoter sequences. J. Mol. Biol. 212, 653–578.

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© 1994 Humana Press Inc., Totowa, NJ

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Bender, P.K., Larson, T.J. (1994). PC/GENE: Searches for Functional Sites in Nucleic Acids and Proteins. In: Griffin, A.M., Griffin, H.G. (eds) Computer Analysis of Sequence Data. Methods in Molecular Biology, vol 24. Humana Press. https://doi.org/10.1385/0-89603-246-9:299

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  • DOI: https://doi.org/10.1385/0-89603-246-9:299

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-246-0

  • Online ISBN: 978-1-59259-511-2

  • eBook Packages: Springer Protocols

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