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DNA and Histone Methylation in Brain Cancer

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DNA and Histone Methylation as Cancer Targets

Part of the book series: Cancer Drug Discovery and Development ((CDD&D))

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Abstract

Brain tumors are not rare solid cancer. Among them, gliomas are the most frequently occurring primary brain tumors in adults. Although they exist in different malignant stages, including histologically benign forms and highly aggressive states, most gliomas are clinically challenging for neuro-oncologists because of their infiltrative growth patterns and inherent relapse tendency with increased malignancy and dismal prognosis. Extensive genetic analyses of glioma have revealed a variety of deregulated genetic pathways involved in DNA repair, apoptosis, cell migration/adhesion, and cell cycle. Recently, it has become evident that epigenetic alterations may also be an important factor for glioma genesis. Epigenetic events can be defined as mitotically heritable changes in gene expression that are not due to changes in the primary DNA sequence. Epigenetic mechanisms, including those involving enzymatic modifications to DNA or histone proteins, thereby regulating gene expression, are increasingly recognized as a source of phenotypic variability in biology. Of epigenetic marks, DNA and histone methylation is a key mark that regulates gene expression and thus modulates a wide range of oncogenic processes. In this review, I discuss the neuro-oncological significance of DNA and histone methylation in patients with brain cancer while briefly overviewing the biological roles of histone modifications.

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References

  1. Anand R, Marmorstein R (2007) Structure and mechanism of lysine-specific demethylase enzymes. J Biol Chem 282:35425–35429

    Article  CAS  PubMed  Google Scholar 

  2. Ancelin K, Lange UC, Hajkova P, Schneider R, Bannister AJ, Kouzarides T, Surani MA (2006) Blimp1 associates with Prmt5 and directs histone arginine methylation in mouse germ cells. Nat Cell Biol 8:623–630

    Article  CAS  PubMed  Google Scholar 

  3. Benetatos L, Vartholomatos G, Hatzimichael E (2011) MEG3 imprinted gene contribution in tumorigenesis. Int J Cancer 129(4):773–779

    Article  CAS  PubMed  Google Scholar 

  4. Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, Cuff J, Fry B, Meissner A, Wernig M, Plath K, Jaenisch R, Wagschal A, Feil R, Schreiber SL, Lander ES (2006) A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125:315–326

    Article  CAS  PubMed  Google Scholar 

  5. Botuyan MV, Lee J, Ward IM, Kim JE, Thompson JR, Chen J, Mer G (2006) Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair. Cell 127:1361–1373

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Burke TW, Cook JG, Asano M, Nevins JR (2001) Replication factors MCM2 and ORC1 interact with the histone acetyltransferase HBO1. J Biol Chem 276:15397–15408

    Article  CAS  PubMed  Google Scholar 

  7. Campos B, Bermejo JL, Han L, Felsberg J, Ahmadi R, Grabe N, Reifenberger G, Unterberg A, Herold-Mende C (2011) Expression of nuclear receptor corepressors and class I histone deacetylases in astrocytic gliomas. Cancer Sci 102:387–392

    Article  CAS  PubMed  Google Scholar 

  8. Cao R, Wang L, Wang H, Xia L, Erdjument-Bromage H, Tempst P, Jones RS, Zhang Y (2002) Role of histone H3 lysine 27 methylation in Polycomb-group silencing. Science 298:1039–1043

    Article  CAS  PubMed  Google Scholar 

  9. Cimbora DM, Schubeler D, Reik A, Hamilton J, Francastel C, Epner EM, Groudine M (2000) Long-distance control of origin choice and replication timing in the human beta-globin locus are independent of the locus control region. Mol Cell Biol 20:5581–5591

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Clark SJ, Harrison J, Frommer M (1995) CpNpG methylation in mammalian cells. Nat Genet 10:20–27

    Article  CAS  PubMed  Google Scholar 

  11. Clarke S (1993) Protein methylation. Curr Opin Cell Biol 5:977–983

    Article  CAS  PubMed  Google Scholar 

  12. Dacwag CS, Ohkawa Y, Pal S, Sif S, Imbalzano AN (2007) The protein arginine methyltransferase Prmt5 is required for myogenesis because it facilitates ATP-dependent chromatin remodeling. Mol Cell Biol 27:384–394

    Article  CAS  PubMed  Google Scholar 

  13. Di Croce L (2005) Chromatin modifying activity of leukaemia associated fusion proteins. Hum Mol Genet 14:R77–R84

    Article  PubMed  Google Scholar 

  14. Downs JA, Cote J (2005) Dynamics of chromatin during the repair of DNA double-strand breaks. Cell Cycle 4:1373–1376

    Article  CAS  PubMed  Google Scholar 

  15. Downs JA, Allard S, Jobin-Robitaille O, Javaheri A, Auger A, Bouchard N, Kron SJ, Jackson SP, Côté J (2004) Binding of chromatin-modifying activities to phosphorylated histone H2A at DNA damage sites. Mol Cell 16:979–990

    Article  CAS  PubMed  Google Scholar 

  16. Doyon Y, Cayrou C, Ullah M, Landry AJ, Côté V, Selleck W, Lane WS, Tan S, Yang XJ, Côté J (2006) ING tumor suppressor proteins are critical regulators of chromatin acetylation required for genome expression and perpetuation. Mol Cell 21:51–64

    Article  CAS  PubMed  Google Scholar 

  17. Eden A, Gaudet F, Waghmare A, Jaenisch R (2003) Chromosomal instability and tumors promoted by DNA hypomethylation. Science 300:455

    Article  CAS  PubMed  Google Scholar 

  18. Esteller M (2007) Cancer epigenomics: DNA methylomes and histone-modification maps. Nat Rev Genet 8:286–298

    Article  CAS  PubMed  Google Scholar 

  19. Feng Q, Wang H, Ng HH, Erdjument-Bromage H, Tempst P, Struhl K, Zhang Y (2002) Methylation of H3-lysine 79 is mediated by a new family of HMTases without a SET domain. Curr Biol 12:1052–1058

    Article  CAS  PubMed  Google Scholar 

  20. Fouse SD, Shen Y, Pellegrini M, Cole S, Meissner A, Van Neste L, Jaenisch R, Fan G (2008) Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3 K4/K27 trimethylation. Cell Stem Cell 2:160–169

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  21. Gary JD, Clarke S (1998) RNA and protein interactions modulated by protein arginine methylation. Prog Nucleic Acid Res Mol Biol 61:65–131

    Article  CAS  PubMed  Google Scholar 

  22. Gimsing P, Hansen M, Knudsen LM, Knoblauch P, Christensen IJ, Ooi CE, Buhl-Jensen P (2008) A phase I clinical trial of the histone deacetylase inhibitor belinostat in patients with advanced hematological neoplasia. Eur J Haematol 81:170–176

    Article  CAS  PubMed  Google Scholar 

  23. Guccione E, Bassi C, Casadio F, Martinato F, Cesaroni M, Schuchlautz H, Luscher B, Amati B (2007) Methylation of histone H3R2 by PRMT6 and H3K4 by an MLL complex are mutually exclusive. Nature 449:933–937

    Article  CAS  PubMed  Google Scholar 

  24. Hakimi MA, Dong Y, Lane WS, Speicher DW, Shiekhattar R (2003) A candidate X-linked mental retardation gene is a component of a new family of histone deacetylase-containing complexes. J Biol Chem 278:7234–7239

    Article  CAS  PubMed  Google Scholar 

  25. Hamada S, Kim TD, Suzuki T, Itoh Y, Tsumoto H, Nakagawa H, Janknecht R, Miyata N (2009) Synthesis and activity of Noxalylglycine and its derivatives as Jumonji C-domain containing histone lysine demethylase inhibitors. Bioorg Med Chem Lett 19:2852–2855

    Article  CAS  PubMed  Google Scholar 

  26. Hansen RS, Gartler SM (1990) 5-Azacytidine-induced reactivation of the human X chromosome-linked PGK1 gene is associated with a large region of cytosine demethylation in the 5′ CpG island. Proc Natl Acad Sci U S A 87:4174–4178

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  27. Hayry V, Tanner M, Blom T, Tynninen O, Roselli A, Ollikainen M, Sariola H, Wartiovaara K, Nupponen NN (2008) Copy number alterations of the polycomb gene BMI1 in gliomas. Acta Neuropathol 116:97–102

    Article  PubMed  Google Scholar 

  28. Henikoff S, Ahmad K (2005) Assembly of variant histones into chromatin. Annu Rev Cell Dev Biol 21:133–153

    Article  CAS  PubMed  Google Scholar 

  29. Hirota T, Lipp JJ, Toh BH, Peters JM (2005) Histone H3 serine 10 phosphorylation by Aurora B causes HP1 dissociation from heterochromatin. Nature 438:1176–1180

    Article  CAS  PubMed  Google Scholar 

  30. Huang J, Berger SL (2008) The emerging field of dynamic lysine methylation of non-histone proteins. Curr Opin Genet Dev 18:152–158

    Article  CAS  PubMed  Google Scholar 

  31. Jenuwein T, Allis CD (2001) Translating the histone code. Science 293:1074–1080

    Article  CAS  PubMed  Google Scholar 

  32. Jung KW, Ha JH, Lee SH, Won YJ, Yoo H (2013) An updated nationwide epidemiology of primary brain tumors in republic of Korea. Brain Tumor Res Treat 1:16–23

    Article  PubMed  PubMed Central  Google Scholar 

  33. Kampranis SC, Tsichlis PN (2009) Histone demethylases and cancer. Adv Cancer Res 102:103–169

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  34. Kornberg RD, Lorch Y (1999) Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell 98:285–294

    Article  CAS  PubMed  Google Scholar 

  35. Kouzarides T (2002) Histone methylation in transcriptional control. Curr Opin Genet Dev 12(2):198–209

    Article  CAS  PubMed  Google Scholar 

  36. Kouzarides T (2007) Chromatin modifications and their function. Cell 128:693–705

    Article  CAS  PubMed  Google Scholar 

  37. Li E, Beard C, Jaenisch R (1993) Role for DNA methylation in genomic imprinting. Nature 366:362–365

    Article  CAS  PubMed  Google Scholar 

  38. Li A, Walling J, Kotliarov Y, Center A, Steed ME, Ahn SJ, Rosenblum M, Mikkelsen T, Zenklusen JC, Fine HA (2008) Genomic changes and gene expression profiles reveal that established glioma cell lines are poorly representative of primary human gliomas. Mol Cancer Res 6:21–30

    Article  CAS  PubMed  Google Scholar 

  39. Liu BL, Cheng JX, Zhang X, Wang R, Zhang W, Lin H, Xiao X, Cai S, Chen XY, Cheng H (2010) Global histone modification patterns as prognostic markers to classify glioma patients. Cancer Epidemiol Biomark Prev 19(11):2888–2896

    Article  CAS  Google Scholar 

  40. Lucio-Eterovic AK, Cortez MA, Valera ET, Motta FJ, Queiroz RG, Machado HR, Carlotti CG Jr, Neder L, Scrideli CA, Tone LG (2008) Differential expression of 12 histone deacetylase (HDAC) genes in astrocytomas and normal brain tissue: class II and IV are hypoexpressed in glioblastomas. BMC Cancer 8:243

    Article  PubMed  PubMed Central  Google Scholar 

  41. Masumoto H, Hawke D, Kobayashi R, Verreault A (2005) A role for cell-cycle-regulated histone H3 lysine 56 acetylation in the DNA damage response. Nature 436:294–298

    Article  CAS  PubMed  Google Scholar 

  42. McBride AE, Silver PA (2001) State of the Arg: protein methylation at arginine comes of age. Cell 106:5–8

    Article  CAS  PubMed  Google Scholar 

  43. Mercurio C, Plyte S, Minucci S (2012) Alterations of histone modifications in cancer. Epigenet Hum Dis 4:53–87

    Article  Google Scholar 

  44. Metzger E, Wissmann M, Yin N, Müller JM, Schneider R, Peters AH, Günther T, Buettner R, Schüle R (2005) LSD1 demethylates repressive histone marks to promote androgen-receptor-dependent transcription. Nature 437:436–439

    CAS  PubMed  Google Scholar 

  45. Metzger E, Imhof A, Patel D, Kahl P, Hoffmeyer K, Friedrichs N, Müller JM, Greschik H, Kirfel J, Ji S, Kunowska N, Beisenherz-Huss C, Günther T, Buettner R, Schüle R (2010) Phosphorylation of histone H3T6 by PKC-beta(I) controls demethylation at histone H3K4. Nature 464:792–796

    Article  CAS  PubMed  Google Scholar 

  46. Mills KD, Ferguson DO, Alt FW (2003) The role of DNA breaks in genomic instability and tumorigenesis. Immunol Rev 194:77–95

    Article  CAS  PubMed  Google Scholar 

  47. Milne TA, Briggs SD, Brock HW, Martin ME, Gibbs D, Allis CD, Hess JL (2002) MLL targets SET domain methyltransferase activity to Hox gene promoters. Mol Cell 10:1107–1117

    Article  CAS  PubMed  Google Scholar 

  48. Murr R, Vaissiere T, Sawan C, Shukla V, Herceg Z (2007) Orchestration of chromatin-based processes: mind the TRRAP. Oncogene 26:5358–5372

    Article  CAS  PubMed  Google Scholar 

  49. Murray K (1964) The occurrence of Epsilon-N-methyl lysine in histones. Biochemistry 3:10–15

    Article  CAS  PubMed  Google Scholar 

  50. Nishioka K, Rice JC, Sarma K, Erdjument-Bromage H, Werner J, Wang Y, Chuikov S, Valenzuela P, Tempst P, Steward R, Lis JT, Allis CD, Reinberg D (2002) PR-Set7 is a nucleosome-specific methyltransferase that modifies lysine 20 of histone H4 and is associated with silent chromatin. Mol Cell 9:1201–1213

    Article  CAS  PubMed  Google Scholar 

  51. Norton VG, Imai BS, Yau P, Bradbury EM (1989) Histone acetylation reduces nucleosome core particle linking number change. Cell 57:449–457

    Article  CAS  PubMed  Google Scholar 

  52. Ohm JE, McGarvey KM, Yu X, Cheng L, Schuebel KE, Cope L, Mohammad HP, Chen W, Daniel VC, Yu W, Berman DM, Jenuwein T, Pruitt K, Sharkis SJ, Watkins DN, Herman JG, Baylin SB (2007) A stem cell-like chromatin pattern may predispose tumor suppressor genes to DNA hypermethylation and heritable silencing. Nat Genet 39:237–242

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  53. Okano M, Xie S, Li E (1998) Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases. Nat Genet 19:219–220

    Article  CAS  PubMed  Google Scholar 

  54. Pal S, Vishwanath SN, Erdjument-Bromage H, Tempst P, Sif S (2004) Human SWI/SNF-associated PRMT5 methylates histone H3 arginine 8 and negatively regulates expression of ST7 and NM23 tumor suppressor genes. Mol Cell Biol 24:9630–9645

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  55. Parsons DW, Jones S, Zhang X, Lin JC, Leary RJ, Angenendt P, Mankoo P, Carter H, Siu IM, Gallia GL, Olivi A, McLendon R, Rasheed BA, Keir S, Nikolskaya T, Nikolsky Y, Busam DA, Tekleab H, Diaz LA Jr, Hartigan J, Smith DR, Strausberg RL, Marie SK, Shinjo SM, Yan H, Riggins GJ, Bigner DD, Karchin R, Papadopoulos N, Parmigiani G, Vogelstein B, Velculescu VE, Kinzler KW (2008) An integrated genomic analysis of human glioblastoma multiforme. Science 321(5897):1807–1812

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  56. Peterson CL, Laniel MA (2004) Histones and histone modifications. Curr Biol 14:R546–R551

    Article  CAS  PubMed  Google Scholar 

  57. Petrij F, Giles RH, Dauwerse HG, Saris JJ, Hennekam RC, Masuno M, Tommerup N, van Ommen GJ, Goodman RH, Peters DJ (1995) Rubinstein-Taybi syndrome caused by mutations in the transcriptional coactivator CBP. Nature 376(6538):348–351

    Article  CAS  PubMed  Google Scholar 

  58. Rea S, Eisenhaber F, O’Carroll D, Strahl BD, Sun ZW, Schmid M, Opravil S, Mechtler K, Ponting CP, Allis CD, Jenuwein T (2000) Regulation of chromatin structure by site-specific histone H3 methyltransferases. Nature 406:593–599

    Article  CAS  PubMed  Google Scholar 

  59. Sanders SL, Portoso M, Mata J, Bahler J, Allshire RC, Kouzarides T (2004) Methylation of histone H4 lysine 20 controls recruitment of Crb2 to sites of DNA damage. Cell 119:603–614

    Article  CAS  PubMed  Google Scholar 

  60. Santos-Rosa H, Kirmizis A, Nelson C, Bartke T, Saksouk N, Cote J, Kouzarides T (2009) Histone H3 tail clipping regulates gene expression. Nat Struct Mol Biol 16:17–22

    Article  CAS  PubMed  Google Scholar 

  61. Sawan C, Herceg Z (2010) Histone modifications and cancer. Adv Genet 70:57–85

    CAS  PubMed  Google Scholar 

  62. Schmidt N, Windmann S, Reifenberger G, Riemenschneider MJ (2012) DNA hypermethylation and histone modifications down-regulate the candidate tumor suppressor gene RRP22 on 22q12 in human gliomas. Brain Pathol 22:17–25

    Article  CAS  PubMed  Google Scholar 

  63. Schulte JH, Lim S, Schramm A, Friedrichs N, Koster J, Versteeg R, Ora I, Pajtler K, Klein-Hitpass L, Kuhfittig-Kulle S, Metzger E, Schüle R, Eggert A, Buettner R, Kirfel J (2009) Lysine-specific demethylase 1 is strongly expressed in poorly differentiated neuroblastoma: implications for therapy. Cancer Res 69:2065–2071

    Article  CAS  PubMed  Google Scholar 

  64. Schurter BT, Koh SS, Chen D, Bunick GJ, Harp JM, Hanson BL, Henschen-Edman A, Mackay DR, Stallcup MR, Aswad DW (2001) Methylation of histone H3 by coactivator-associated arginine methyltransferase 1. Biochemistry 40:5747–5756

    Article  CAS  PubMed  Google Scholar 

  65. Schwartzentruber J, Korshunov A, Liu XY, Jones DT, Pfaff E, Jacob K, Sturm D, Fontebasso AM, Quang DA, Tönjes M, Hovestadt V, Albrecht S, Kool M, Nantel A, Konermann C, Lindroth A, Jäger N, Rausch T, Ryzhova M, Korbel JO, Hielscher T, Hauser P, Garami M, Klekner A, Bognar L, Ebinger M, Schuhmann MU, Scheurlen W, Pekrun A, Frühwald MC, Roggendorf W, Kramm C, Dürken M, Atkinson J, Lepage P, Montpetit A, Zakrzewska M, Zakrzewski K, Liberski PP, Dong Z, Siegel P, Kulozik AE, Zapatka M, Guha A, Malkin D, Felsberg J, Reifenberger G, von Deimling A, Ichimura K, Collins VP, Witt H, Milde T, Witt O, Zhang C, Castelo-Branco P, Lichter P, Faury D, Tabori U, Plass C, Majewski J, Pfister SM, Jabado N (2012) Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma. Nature 482:226–231

    Article  CAS  PubMed  Google Scholar 

  66. Shahbazian MD, Grunstein M (2007) Functions of site-specific histone acetylation and deacetylation. Annu Rev Biochem 76:75–100

    Article  CAS  PubMed  Google Scholar 

  67. Shi Y (2007) Histone lysine demethylases: emerging roles in development, physiology and disease. Nat Rev Genet 8:829–833

    Article  CAS  PubMed  Google Scholar 

  68. Shi Y, Lan F, Matson C, Mulligan P, Whetstine JR, Cole PA, Casero RA, Shi Y (2004) Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 119:941–953

    Article  CAS  PubMed  Google Scholar 

  69. Shilatifard A (2006) Chromatin modifications by methylation and ubiquitination: implications in the regulation of gene expression. Annu Rev Biochem 75:243–269

    Article  CAS  PubMed  Google Scholar 

  70. Shroff R, Arbel-Eden A, Pilch D, Ira G, Bonner WM, Petrini JH, Haber JE, Lichten M (2004) Distribution and dynamics of chromatin modification induced by a defined DNA double-strand break. Curr Biol 14:1703–1711

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  71. Sims RJ 3rd, Reinberg D (2006) Histone H3 Lys 4 methylation: caught in a bind? Genes Dev 20:2779–2786

    Article  CAS  PubMed  Google Scholar 

  72. Sims RJ 3rd, Nishioka K, Reinberg D (2003) Histone lysine methylation: a signature for chromatin function. Trends Genet 19:629–639

    Article  CAS  PubMed  Google Scholar 

  73. Strahl BD, Grant PA, Briggs SD, Sun ZW, Bone JR, Caldwell JA, Mollah S, Cook RG, Shabanowitz J, Hunt DF, Allis CD (2002) Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression. Mol Cell Biol 22:1298–1306

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  74. Sun ZW, Allis CD (2002) Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast. Nature 418:104–108

    Article  CAS  PubMed  Google Scholar 

  75. Sun Y, Jiang X, Xu Y, Ayrapetov MK, Moreau LA, Whetstine JR, Price BD (2009) Histone H3 methylation links DNA damage detection to activation of the tumour suppressor Tip60. Nat Cell Biol 11:1376–1382

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  76. Tachibana M, Sugimoto K, Nozaki M, Ueda J, Ohta T, Ohki M, Fukuda M, Fukuda M, Takeda N, Niida H, Kato H, Shinkai Y (2002) G9a histone methyltransferase plays a dominant role in euchromatic histone H3 lysine 9 methylation and is essential for early embryogenesis. Genes Dev 16:1779–1791

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  77. Tachibana M, Ueda J, Fukuda M, Takeda N, Ohta T, Iwanari H, Sakihama T, Kodama T, Hamakubo T, Shinkai Y (2005) Histone methyltransferases G9a and GLP form heteromeric complexes and are both crucial for methylation of euchromatin at H3-K9. Genes Dev 19:815–826

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  78. Torres-Padilla ME, Parfitt DE, Kouzarides T, Zernicka-Goetz M (2007) Histone arginine methylation regulates pluripotency in the early mouse embryo. Nature 445:214–218

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  79. Tsukada Y, Fang J, Erdjument-Bromage H, Warren ME, Borchers CH, Tempst P, Zhang Y (2006) Histone demethylation by a family of JmjC domain-containing proteins. Nature 439:811–816

    Article  CAS  PubMed  Google Scholar 

  80. Turner BM (2005) Reading signals on the nucleosome with a new nomenclature for modified histones. Nat Struct Mol Biol 12:110–112

    Article  CAS  PubMed  Google Scholar 

  81. Ueda R, Suzuki T, Mino K, Tsumoto H, Nakagawa H, Hasegawa M, Sasaki R, Mizukami T, Miyata N (2009) Identification of cell-active lysine specific demethylase 1-selective inhibitors. J Am Chem Soc 131:17536–17537

    Article  CAS  PubMed  Google Scholar 

  82. Unnikrishnan A, Gafken PR, Tsukiyama T (2010) Dynamic changes in histone acetylation regulate origins of DNA replication. Nat Struct Mol Biol 17:430–437

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  83. van Attikum H, Gasser SM (2005) The histone code at DNA breaks: a guide to repair? Nat Rev 6:757–765

    Article  Google Scholar 

  84. van Leeuwen F, Gafken PR, Gottschling DE (2002) Dot1p modulates silencing in yeast by methylation of the nucleosome core. Cell 109:745–756

    Article  PubMed  Google Scholar 

  85. Vermeulen M, Mulder KW, Denissov S, Pijnappel WW, van Schaik FM, Varier RA, Baltissen MP, Stunnenberg HG, Mann M, Timmers HT (2007) Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4. Cell 131:58–69

    Article  CAS  PubMed  Google Scholar 

  86. Vissers JH, Nicassio F, van Lohuizen M, Di Fiore PP, Citterio E (2008) The many faces of ubiquitinated histone H2A: insights from the DUBs. Cell Div 3:8

    Article  PubMed  PubMed Central  Google Scholar 

  87. Wang H, Cao R, Xia L, Erdjument-Bromage H, Borchers C, Tempst P, Zhang Y (2001) Purification and functional characterization of a histone H3-lysine 4-specific methyltransferase. Mol Cell 8:1207–1217

    Article  CAS  PubMed  Google Scholar 

  88. Weiss VH, McBride AE, Soriano MA, Filman DJ, Silver PA, Hogle JM (2000) The structure and oligomerization of the yeast arginine methyltransferase, Hmt1. Nat Struct Biol 7:1165–1171

    Article  CAS  PubMed  Google Scholar 

  89. Wen PY, Kesari S (2008) Malignant gliomas in adults. N Engl J Med 359:492–507

    Article  CAS  PubMed  Google Scholar 

  90. Whetstine JR, Nottke A, Lan F, Huarte M, Smolikov S, Chen Z, Spooner E, Li E, Zhang G, Colaiacovo M, Shi Y (2006) Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases. Cell 125:467–481

    Article  CAS  PubMed  Google Scholar 

  91. Yang M, Culhane JC, Szewczuk LM, Jalili P, Ball HL, Machius M, Cole PA, Yu H (2007) Structural basis for the inhibition of the LSD1 histone demethylase by the antidepressant trans-2-phenylcyclopropylamine. Biochemistry 46:8058–8065

    Article  CAS  PubMed  Google Scholar 

  92. Zaidi SK, Young DW, Montecino M, Lian JB, Stein JL, van Wijnen AJ, Stein GS (2010) Architectural epigenetics: mitotic retention of mammalian transcriptional regulatory information. Mol Cell Biol 30(20):4758–4766

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  93. Zhang J, Xu F, Hashimshony T, Keshet I, Cedar H (2002) Establishment of transcriptional competence in early and late S phase. Nature 420:198–202

    Article  CAS  PubMed  Google Scholar 

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Acknowledgements

I would like to thank Min Gyu Lee, Ph.D. (mglee@mdanderson.org) whose recent affiliation is the Department of Molecular and Cellular Oncology, The University of Texas MD Anderson Cancer Center for reviewing this manuscript sincerely. Recently, Sung-Hun Lee moved to Plumbline Life Science Inc., whose affiliation is Department of Research and Development, Plumbline Life Science Inc., Ansan, Gyeonggi-do, South Korea.

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Lee, SH., Kim, Y.Z. (2017). DNA and Histone Methylation in Brain Cancer. In: Kaneda, A., Tsukada, Yi. (eds) DNA and Histone Methylation as Cancer Targets. Cancer Drug Discovery and Development. Humana Press, Cham. https://doi.org/10.1007/978-3-319-59786-7_12

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