Skip to main content

Semi-automatic Generation of a Patient Preoperative Knowledge-Base from a Legacy Clinical Database

  • Conference paper
On the Move to Meaningful Internet Systems: OTM 2009 (OTM 2009)

Part of the book series: Lecture Notes in Computer Science ((LNISA,volume 5871))

Abstract

We discuss our practical experience of automating the process of migrating a clinical database with a weak underlying information model towards a high level representation of a patient medical history information in the Web Ontology Language (OWL). The purpose of this migration is to enable sophisticated clinical decision support functionalities based on semantic-web technologies, i.e. reasoning on a clinical ontology. We discuss the research and practical motivation behind this process, including improved interoperability and additional classification functionalities. We propose a methodology to optimise the efficiency of this process and provide practical implementation examples.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Bouamrane, M.M., Rector, A., Hurrell, M.: Gathering Precise Patient Medical History with an Ontology-driven Adaptive Questionnaire. In: Proceedings of the 21st IEEE International Symposium on Computer-Based Medical Systems, CBMS 2008, Jyväskylä, Finland, pp. 539–541. IEEE Computer Society, Los Alamitos (2008)

    Chapter  Google Scholar 

  2. Bouamrane, M.-M., Rector, A.L., Hurrell, M.: Ontology-Driven Adaptive Medical Information Collection System. In: An, A., Matwin, S., Raś, Z.W., Ślęzak, D. (eds.) Foundations of Intelligent Systems. LNCS (LNAI), vol. 4994, pp. 574–584. Springer, Heidelberg (2008)

    Chapter  Google Scholar 

  3. Bouamrane, M.M., Rector, A.L., Hurrell, M.: Using Ontologies for an Intelligent Patient Modelling, Adaptation and Management System. In: Meersman, R., Tari, Z. (eds.) OTM 2008, Part II. LNCS, vol. 5332, pp. 1458–1470. Springer, Heidelberg (2008)

    Google Scholar 

  4. Bouamrane, M.M., Rector, A., Hurrell, M.: Development of an Ontology of Preoperative Risk Assessment for a Clinical Decision Support System. In: Proceedings of the 22nd IEEE International Symposium on Computer-Based Medical Systems, CBMS 2009, Albuquerque, US. IEEE Computer Society, Los Alamitos (to appear, 2009)

    Google Scholar 

  5. Copeland, G., Jones, D., Walters, M.: Possum: a scoring system for surgical audit. British Journal of Surgery 78(3), 355–360 (1991)

    Article  Google Scholar 

  6. Sirin, E., Parsia, B., Grau, B.C., Kalyanpur, A., Katz, Y.: Pellet: A practical OWL-DL reasoner. Journal of Web Semantic 5(2), 51–53 (2007)

    Google Scholar 

  7. Brachman, R., Levesque, H.: Knowledge Representation and Reasoning. Morgan Kaufmann, Elsevier (2004)

    Google Scholar 

  8. Stojanovic, N., Stojanovic, L., Volz, R.: A reverse engineering approach for migrating data-intensive web sites to the semantic web. In: Proceedings of Intelligent Information Processing, IFIP 17th World Computer Congress, Montral, Qubec, Canada, August 2002, pp. 141–154 (2002)

    Google Scholar 

  9. Gottgtroy, P., Kasabov, N., MacDonell, S.: An ontology engineering approach for knowledge discovery from data in evolving domains. In: Proceedings of Data Mining IV, Rio de Janeiro, Brasil, pp. 43–52 (2003)

    Google Scholar 

  10. Verheyden, P., De Bo, J., Meersman, R.: Semantically unlocking database content through ontology-based mediation. In: Bussler, C.J., Tannen, V., Fundulaki, I. (eds.) SWDB 2004. LNCS, vol. 3372, pp. 109–126. Springer, Heidelberg (2005)

    Google Scholar 

  11. Daga, A., de Cesare, S., Lycett, M., Partridge, C.: An ontological approach for recovering legacy business content. In: Hawaii International Conference on System Sciences, vol. 8, p. 224a (2005)

    Google Scholar 

  12. Kupfer, A., Eckstein, S., Neumann, K., Mathiak, B.: Handling changes of database schemas and corresponding ontologies. In: Roddick, J., Benjamins, V.R., Si-said Cherfi, S., Chiang, R., Claramunt, C., Elmasri, R.A., Grandi, F., Han, H., Hepp, M., Lytras, M.D., Mišić, V.B., Poels, G., Song, I.-Y., Trujillo, J., Vangenot, C. (eds.) ER Workshops 2006. LNCS, vol. 4231, pp. 227–236. Springer, Heidelberg (2006)

    Chapter  Google Scholar 

  13. Benslimane, S.M., Malki, M., Rahmouni, M.K., Benslimane, D.: Extracting Personalised Ontology from Data-Intensive Web Application: an HTML Forms-Based Reverse Engineering Approach. Informatica 18(4), 511–534 (2007)

    MATH  Google Scholar 

  14. Lubyte, L., Tessaris, S.: Extracting ontologies from relational databases. In: Proceedings of the 20th Int. Workshop on Description Logics, DL 2007, Brixen-Bressanone, Italy, pp. 387–395 (2007)

    Google Scholar 

  15. Cure, O., Bensaid, J.D.: Integration of relational databases into OWL knowledge bases: demonstration of the DBOM system. In: Proceedings of the 24th International Conference on Data Engineering Workshops, ICDE 2008, Cancn, Mxico, April 2008, pp. 230–233. IEEE Computer Society, Los Alamitos (2008)

    Chapter  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2009 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Bouamrane, MM., Rector, A., Hurrell, M. (2009). Semi-automatic Generation of a Patient Preoperative Knowledge-Base from a Legacy Clinical Database. In: Meersman, R., Dillon, T., Herrero, P. (eds) On the Move to Meaningful Internet Systems: OTM 2009. OTM 2009. Lecture Notes in Computer Science, vol 5871. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-05151-7_34

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-05151-7_34

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-05150-0

  • Online ISBN: 978-3-642-05151-7

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics