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Regularized Dictionary Learning with Robust Sparsity Fitting for Compressed Sensing Multishell HARDI

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Computational Diffusion MRI (MICCAI 2016)

Part of the book series: Mathematics and Visualization ((MATHVISUAL))

Abstract

This paper presents a new compressed sensing framework for multishell HARDI. Unlike methods that model diffusion signals using analytical bases, we learn a dictionary of multishell diffusion signals, with a proposed regularization term to handle low signal-to-noise ratios at high b values. We combine the dictionary model for diffusion signals together with a multiscale (wavelet-based) spatial model on images for compressed sensing. To control overfitting of the dictionary to tracts with unknown orientations, we use a strong non-sparsity penalty that behaves close to the desirable L 0 pseudo-norm. Our framework allows undersampling gradient directions, shells, and k-space. The results show improved reconstructions from our framework, over the state of the art.

Suyash P. Awate thanks funding via IIT Bombay Seed Grant 14IRCCSG010. All work done at IIT Bombay.

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References

  1. Alexander, D.: Multiple-fiber reconstruction algorithms for diffusion MRI. Ann. N. Y. Acad Sci. 1064, 113–33 (2005)

    Article  Google Scholar 

  2. Aranda, R., Ramirez-Manzanares, A., Rivera, M.: Sparse and adaptive diffusion dictionary for recovering intra-voxel white matter structure. Med. Image Anal. 26 (1), 243–55 (2015)

    Article  Google Scholar 

  3. Awate, S.P., DiBella, E.V.R.: Spatiotemporal dictionary learning for undersampled dynamic MRI reconstruction via joint frame-based and dictionary-based sparsity. In: IEEE Symposium on Biomedical Imaging, pp. 318–321 (2012)

    Google Scholar 

  4. Awate, S.P., DiBella, E.V.R.: Compressed sensing HARDI via rotation-invariant concise dictionaries, flexible k-space undersampling, and multiscale spatial regularity. In: IEEE International Symposium on Biomedical Imaging, pp. 9–12 (2013)

    Google Scholar 

  5. Candes, E., Wakin, M., Boyd, S.: Enhanced sparsity by reweighted l 1 minimization. J. Fourier Anal. Appl. 14, 877–905 (2008)

    Article  MathSciNet  MATH  Google Scholar 

  6. Cheng, J., Deriche, R., Jiang, T., Shen, D., Yap, P.T.: Non-negative spherical deconvolution for estimation of fiber orientation distribution function in single-/multi-shell diffusion MRI. NeuroImage 101, 750–64 (2014)

    Article  Google Scholar 

  7. Descoteaux, M., Deriche, R., LeBihan, D., Mangin, J.F., Poupon, C.: Multiple q-shell diffusion propagator imaging. Med. Imag. Anal. 15, 603–621 (2011)

    Article  Google Scholar 

  8. Donoho, D., Elad, M.: Optimally sparse representation in general (nonorthogonal) dictionaries via l1 minimization. Proc. Natl. Acad. Sci. 100 (5), 2197–2202 (2003)

    Article  MathSciNet  MATH  Google Scholar 

  9. Gramfort, A., Poupon, C., Descoteaux, M.: Denoising and fast diffusion imaging with physically constrained sparse dictionary learning. Med. Imag. Anal. 18 (1), 36–49 (2014)

    Article  Google Scholar 

  10. Jian, B., Vemuri, B.: A unified computational framework for deconvolution to reconstruct multiple fibers from diffusion weighted MRI. IEEE Trans. Med. Imag. 26, 1464–1471 (2007)

    Article  Google Scholar 

  11. Landman, B., Bogovic, J., Wan, H., ElShahaby, F., Bazin, P.L., Prince, J.: Resolution of crossing fibers with constrained compressed sensing using diffusion tensor MRI. NeuroImage 59, 2175–2186 (2012)

    Article  Google Scholar 

  12. Li, S.Z.: Markov Random Field Modeling in Computer Vision. Springer, Berlin (1995)

    Book  Google Scholar 

  13. McClymont, D., Teh, I., Whittington, H., Grau, V., Schneider, J.: Prospective acceleration of diffusion tensor imaging with compressed sensing using adaptive dictionaries. Magn. Res. Med. 76, 248–258 (2016)

    Article  Google Scholar 

  14. Merlet, S., Caruyer, E., Ghosh, A., Deriche, R.: A computational diffusion MRI and parametric dictionary learning framework for modeling the diffusion signal and its features. Med. Imag. Anal. 17 (7), 830–843 (2013)

    Article  Google Scholar 

  15. Michailovich, O., Rathi, Y., Dolui, S.: Spatially regularized compressed sensing for high angular resolution diffusion imaging. IEEE Trans. Med. Imag. 30, 1100–1115 (2011)

    Article  Google Scholar 

  16. Nesterov, Y.: Smooth minimization of non-smooth functions. Math. Programm. Ser. A 103, 127–152 (2005)

    Article  MathSciNet  MATH  Google Scholar 

  17. Ning, L., Setsompop, K., Michailovich, O., Makris, N., Shenton, M., Westin, C.F., Rathi, Y.: A joint compressed-sensing and super-resolution approach for very high-resolution diffusion imaging. NeuroImage 125, 386–400 (2016)

    Article  Google Scholar 

  18. Rathi, Y., Michailovich, O., Setsompop, K., Bouix, S., Shenton, M., Westin, C.F.: Sparse multi-shell diffusion imaging. Med. Imag. Comput. Assist. Interv. 14, 58–65 (2011)

    Google Scholar 

  19. Scherrer, B., Warfield, S.: Why multiple b-values are required for multi-tensor models: evaluation with a constrained log-Euclidean model. In: IEEE ISBI, pp. 1389–1392 (2012)

    Google Scholar 

  20. Tuch, D., Reese, T., Wiegell, M.: High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity. Magn. Res. Med. 48 (4), 477–582 (2002)

    Article  Google Scholar 

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Correspondence to Suyash P. Awate .

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Gupta, K., Adlakha, D., Agarwal, V., Awate, S.P. (2017). Regularized Dictionary Learning with Robust Sparsity Fitting for Compressed Sensing Multishell HARDI. In: Fuster, A., Ghosh, A., Kaden, E., Rathi, Y., Reisert, M. (eds) Computational Diffusion MRI. MICCAI 2016. Mathematics and Visualization. Springer, Cham. https://doi.org/10.1007/978-3-319-54130-3_3

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