Abstract
Over the past decade, the accumulation of detailed knowledge of antibody structure and function has enabled antibody phage display to emerge as a powerful in vitro alternative to hybridoma methods for creating antibodies. Many antibodies produced using phage display technology have unique properties that are not obtainable using traditional hybridoma technologies. In phage display, selections are performed under controlled, in vitro conditions that are tailored to suit demands of the antigen and the sequence encoding the antibody is immediately available. These features obviate many of the limitations of hybridoma methodology, and because the entire process relies on scalable molecular biology techniques, phage display is also suitable for high-throughput applications. Thus, antibody phage display technology is well suited for genome-scale biotechnology and therapeutic applications. This review describes the antibody phage display technology and highlights examples of antibodies with unique properties that cannot easily be obtained by other technologies.
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von Behring E, Kitasato S (1890) Über das zustandekommen der diphtherie-immunität und der tetanus-immunität bei thieren. Deut Med Wochenzeitschr 16:1113–1114
Köhler G, Milstein C (1975) Continuous cultures of fused cells secreting antibody of predefined specificity. Nature 256:495–497
Courtenay-Luck NS, Epenetos AA, Moore R et al (1986) Development of primary and secondary immune responses to mouse monoclonal antibodies used in the diagnosis and therapy of malignant neoplasms. Cancer Res 46:6489–6493
Tjandra JJ, Ramadi L, McKenzie IF (1990) Development of human anti-murine antibody (HAMA) response in patients. Immunol Cell Biol 68:367–376
Almagro JC, Fransson J (2008) Humanization of antibodies. Front Biosci 13:1619–1633
Hwang WYK, Foote J (2005) Immunogenicity of engineered antibodies. Methods 36:3–10
Kashmiri SVS, De Pascalis R, Gonzales NR, Schlom J (2005) SDR grafting—a new approach to antibody humanization. Methods 36:25–34
Studnicka GM, Soares S, Better M et al (1994) Human engineered monoclonal antibodies retain full specific binding activity by preserving non-CDR complementarity-modulating residues. Protein Eng 7:805–814
Osbourn J, Groves M, Vaughan T (2005) From rodent reagents to human therapeutics using antibody guided selection. Methods 36: 61–68
Fishwild DM, O’Donnell SL, Bengoechea T et al (1996) High-avidity human IgG kappa monoclonal antibodies from a novel strain of minilocus transgenic mice. Nat Biotechnol 14:845–851
Jakobovits A (1995) Production of fully human antibodies by transgenic mice. Curr Opin Biotechnol 6:561–566
Kuroiwa Y, Kasinathan P, Sathiyaseelan T et al (2009) Antigen specific human polyclonal antibodies from hyperimmunized cattle. Nat Biotechnol 27:173–181
Lonberg N, Huszar D (1995) Human antibodies from transgenic mice. Int Rev Immunol 13:65–93
Weiner LM (2006) Fully human therapeutic monoclonal antibodies. J Immunother 29:1–9
Winter G, Milstein C (1991) Man-made antibodies. Nature 349:293–299
McCafferty J, Griffiths AD, Winter G et al (1990) Phage antibodies: filamentous phage displaying antibody variable domains. Nature 348:552–554
Marks JD, Hoogenboom HR, Bonnert TP et al (1991) By-passing immunization. Human antibodies from V-gene libraries displayed on phage. J Mol Bio 222:581–597
Breitling F, Dübel S, Seehaus T (1991) A surface expression vector for antibody screening. Gene 104:147–153
Boder ET, Wittrup KD (1997) Yeast surface display for screening combinatorial polypeptide libraries. Nat Biotechnol 15:553–557
Feldhaus MJ, Siegel RW, Opresko LK et al (2003) Flow-cytometric isolation of human antibodies from a nonimmune Saccharomyces cerevisiae surface display library. Nat Biotechnol 21:163–170
He M, Taussig MJ (2007) Rapid discovery of protein interactions by cell-free protein technologies. Biochem Soc Trans 35:962–965
Jostock T, Dübel S (2005) Screening of molecular repertoires by microbial surface display. Comb Chem High Throughput Screen 8:127–133
Paschke M (2006) Phage display systems and their applications. Appl Microbiol Biotechnol 70:2–11
Zahnd C, Amstutz P, Pluckthun A (2007) Ribosome display: selecting and evolving proteins in vitro that specifically bind to a target. Nat Methods 4:269–279
Chao G, Lau WL, Hackel BJ et al (2006) Isolating and engineering human antibodies using yeast surface display. Nat Protoc 1: 755–768
Benhar I (2007) Design of synthetic antibody libraries. Expert Opin Biol Ther 7:763–779
Bradbury AR, Marks JD (2004) Antibodies from phage antibody libraries. J Immunol Methods 290:29–49
Dübel S, Stoevesandt O, Taussig MJ et al (2010) Generating recombinant antibodies to the complete human proteome. Trends Biotechnol 28:333–339
Mersmann M, Meier D, Mersmann J et al (2010) Towards proteome scale antibody selections using phage display. New Biotechnol 27:118–128
Schofield DJ et al (2007) Application of phage display to high throughput antibody generation and characterization. Genome Biol 8:R254
Colwill K, Gräslund S, Persson MA et al (2011) A roadmap to generate renewable protein binders to the human proteome. Nat Methods 8:551–561
Hust M, Meyer T, Voedisch B et al (2011) A human scFv antibody generation pipeline for proteome research. J Biotechnol 152: 159–170
Koide A, Bailey CW, Huang X et al (1998) The fibronectin type III domain as a scaffold for novel binding proteins. J Mol Biol 284: 1141–1151
Angenendt P, Wilde J, Kijanka G et al (2004) Seeing better through a MIST: evaluation of monoclonal recombinant antibody fragments on microarrays. Anal Chem 76:2916–2921
Philibert P, Stoessel A, Wang W (2007) A focused antibody library for selecting scFvs expressed at high levels in the cytoplasm. BMC Biotechnol 7:1472–6750
Parsons HL, Earnshaw JC, Wilton J et al (1996) Directing phage selections towards specific epitopes. Protein Eng 9:1043–1049
Lassen KS, Bradbury AR, Rehfeld JF et al (2008) Microscale characterization of the binding specificity and affinity of a monoclonal antisulfotyrosyl IgG antibody. Electrophoresis 29:2557–2564
Kehoe JW, Velappan N, Walbol M et al (2006) Using phage display to select antibodies recognizing post-translational modifications independently of sequence context. Mol Cell Proteomics 5:2350–2363
Hoffhines AJ, Damoc E, Bridges KG et al (2006) Detection and purification of tyrosine-sulfated proteins using a novel anti-sulfotyrosine monoclonal antibody. J Biol Chem 281:37877–37887
Raza A, Garcia-Rodriguez C, Lou J et al (2005) Molecular evolution of antibody affinity for sensitive detection of botulinum neurotoxin type A. J Mol Biol 351:158–169
Lee CV, Liang WC, Dennis MS et al (2004) High-affinity human antibodies from phage-displayed synthetic Fab libraries with a single framework scaffold. J Mol Biol 340: 1073–1093
Hanes J, Schaffitzel C, Knappik A et al (2000) Picomolar affinity antibodies from a fully synthetic naive library selected and evolved by ribosome display. Nat Biotechnol 18: 1287–1292
Schier R, McCall A, Adams GP et al (1996) Isolation of picomolar affinity anti-c-erbB-2 single-chain Fv by molecular evolution of the complementarity determining regions in the center of the antibody binding site. J Mol Biol 263:551–567
Yang WP, Green K, Pinz-Sweeney S et al (1995) CDR walking mutagenesis for the affinity maturation of a potent human anti-HIV-1 antibody into the picomolar range. J Mol Biol 254:392–403
Boder ET, Midelfort KS, Wittrup KD (2000) Directed evolution of antibody fragments with monovalent femtomolar antigen-binding affinity. Proc Natl Acad Sci USA 97:10701–10705
Foote J, Eisen HN (1995) Kinetic and affinity limits on antibodies produced during immune responses. Proc Natl Acad Sci USA 92: 1254–1256
Foote J, Eisen HN (2000) Breaking the affinity ceiling for antibodies and T cell receptors. Proc Natl Acad Sci USA 97:10679–10681
Batista FD, Neuberger MS (1998) Affinity dependence of the B cell response to antigen: a threshold, a ceiling, and the importance of off-rate. Immunity 8:751–759
Sidhu SS (2005) Phage display in biotechnology and drug discovery. CRC Press, Baco Raton, FL
Ponsel D, Neugebauer J, Ladetzki-Baehs K et al (2011) High affinity, developability and functional size: the holy grail of combinatorial antibody library generation. Molecules 16:3675–3700
Azzazy HM, Highsmith WE Jr (2002) Phage display technology: clinical applications and recent innovations. Clin Biochem 35: 425–445
Benhar I (2007) Design of synthetic antibody libraries. Expert Opin Biol Ther 7:763–779
Burton DR, Barbas CF III, Persson MA et al (1991) A large array of human monoclonal antibodies to type 1 human immunodeficiency virus from combinatorial libraries of asymptomatic seropositive individuals. Proc Natl Acad Sci USA 88:10134–10137
Kramer RA, Marissen WE, Goudsmit J et al (2005) The human antibody repertoire specific for rabies virus glycoprotein as selected from immune libraries. Eur J Immunol 35:2131–2145
de Carvalho NC, Williamson RA, Parren PW et al (2002) Neutralizing human Fab fragments against measles virus recovered by phage display. J Virol 76:251–258
Zebedee SL, Barbas CF III, Hom YL et al (1992) Human combinatorial antibody libraries to hepatitis B surface antigen. Proc Natl Acad Sci USA 89:3175–3179
Cai X, Garen A (1995) Anti-melanoma antibodies from melanoma patients immunized with genetically modified autologous tumor cells: selection of specific antibodies from single-chain Fv fusion phage libraries. Proc Natl Acad Sci USA 92:6537–6541
Vaughan TJ, Williams AJ, Pritchard K et al (1996) Human antibodies with sub-nanomolar affinities isolated from a large non-immunized phage display library. Nat Biotechnol 14:309–314
Lloyd C, Lowe D, Edwards B et al (2009) Modelling the human immune response: performance of a 1011 human antibody repertoire against a broad panel of therapeutically relevant antigens. Protein Eng Des Sel 22: 159–168
Sheets MD, Amersdorfer P, Finnern R et al (1998) Efficient construction of a large nonimmune phage antibody library: the production of high-affinity human single-chain antibodies to protein antigens. Proc Natl Acad Sci USA 95:6157–6162
De Haard HJ (2002) Construction of large naive Fab libraries. Methods Mol Biol 178: 87–100
Nissim A, Hoogenboom HR, Tomlinson IM et al (1994) Antibody fragments from a ‘single pot’ phage display library as immunochemical reagents. EMBO J 13:692–698
de Kruif J, Boel E, Logtenberg T (1995) Selection and application of human single chain Fv antibody fragments from a semi-synthetic phage antibody display library with designed CDR3 regions. J Mol Biol 248: 97–105
Griffiths AD, Williams SC, Hartley O et al (1994) Isolation of high affinity human antibodies directly from large synthetic repertoires. EMBO J 13:3245–3260
Hoogenboom HR, Winter G (1992) By-passing immunisation. Human antibodies from synthetic repertoires of germline VH gene segments rearranged in vitro. J Mol Biol 227:381–388
Pini A, Viti F, Santucci A et al (1998) Design and use of a phage display library. Human antibodies with subnanomolar affinity against a marker of angiogenesis eluted from a two-dimensional gel. J Biol Chem 273: 21769–21776
Hoet RM, Cohen EH, Kent RB et al (2005) Generation of high-affinity human antibodies by combining donor-derived and synthetic complementarity-determining-region diversity. Nat Biotechnol 23:344–348
Lee CV, Liang WC, Dennis MS et al (2004) High-affinity human antibodies from phage-displayed synthetic Fab libraries with a single framework scaffold. J Mol Biol 340: 1073–1093
Söderlind E, Strandberg L, Jirholt P et al (2000) Recombining germline-derived CDR sequences for creating diverse single-framework antibody libraries. Nat Biotechnol 18:852–856
Rothe C, Urlinger S, Lohning C et al (2008) The human combinatorial antibody library HuCAL GOLD combines diversification of all six CDRs according to the natural immune system with a novel display method for efficient selection of high-affinity antibodies. J Mol Biol 376:1182–1200
Sidhu SS, Li B, Chen Y, Fellouse FA et al (2004) Phage-displayed antibody libraries of synthetic heavy chain complementarity determining regions. J Mol Biol 338:299–310
Fellouse FA, Wiesmann C, Sidhu SS (2004) Synthetic antibodies from a four-amino-acid code: a dominant role for tyrosine in antigen recognition. Proc Natl Acad Sci USA 101:12467–12472
Fellouse FA, Li B, Compaan DM, Peden AA et al (2005) Molecular recognition by a binary code. J Mol Biol 348:1153–1162
Russel M, Linderoth NA, Sali A (1997) Filamentous phage assembly: variation on a protein export theme. Gene 192:23–32
Iannolo G, Minenkova O, Petruzzelli R et al (1995) Modifying filamentous phage capsid: limits in the size of the major capsid protein. J Mol Biol 248:835–844
Kretzschmarm T, Geiser M (1995) Evaluation of antibodies fused to minor coat protein III and major coat protein VIII of bacteriophage M13. Gene 155:61–65
Rondot S, Koch J, Breitling F et al (2001) A helper phage to improve single chain antibody presentation in phage display. Nat Biotechnol 19:75–78
Nelson AL, Dhimolea E, Reichert JM (2010) Development trends for human monoclonal antibody therapeutics. Nat Rev Drug Discov 9:767–774
Edwards BM, Barash SC, Main SH et al (2003) The remarkable flexibility of the human antibody repertoire; isolation of over one thousand different antibodies to a single protein, BLyS. J Mol Biol 334:103–118
Baker KP, Edwards BM, Main SH et al (2003) Generation and characterization of LymphoStat-B, a human monoclonal antibody that antagonizes the bioactivities of B lymphocyte stimulator. Arthritis Rheum 48:3253–3265
Lloyd C, Lowe D, Edwards B et al (2009) Modelling the human immune response: performance of a 1011 human antibody repertoire against a broad panel of therapeutically relevant antigens. Protein Eng Des Sel 22:159–168
Dong J, Demarest SJ, Sereno A et al (2010) Combination of two insulin-like growth factor-I receptor inhibitory antibodies targeting distinct epitopes leads to an enhanced antitumor response. Mol Cancer Ther 9:2593–2604
Doern A, Cao X, Sereno A et al (2009) Characterization of inhibitory anti-insulin-like growth factor receptor antibodies with different epitope specificity and ligand-blocking properties: implications for mechanism of action in vivo. J Biol Chem 284:10254–10267
Dong J, Sereno A, Snyder WB et al (2011) Stable IgG-like bispecific antibodies directed toward the type I insulin-like growth factor receptor demonstrate enhanced ligand blockade and anti-tumor activity. J Biol Chem 286:4703–4717
Baselga J, Gelmon KA, Verma S et al (2010) Phase II trial of pertuzumab and trastuzumab in patients with human epidermal growth factor receptor 2-positive metastatic breast cancer that progressed during prior trastuzumab therapy. J Clin Oncol 28:1138–1144
Wu Y, Cain-Hom C, Choy L et al (2010) Therapeutic antibody targeting of individual Notch receptors. Nature 464:1052–1057
Xie MH, Yuan J, Adams C et al (1997) Direct demonstration of MuSK involvement in acetylcholine receptor clustering through identification of agonist ScFv. Nat Biotechnol 15:768–771
Ellmark P, Andersson H, Abayneh S et al (2008) Identification of a strongly activating human anti-CD40 antibody that suppresses HIV type 1 infection. AIDS Res Hum Retroviruses 24:367–373
Dobson CL, Main S, Newton P et al (2009) Human monomeric antibody fragments to TRAIL-R1 and TRAIL-R2 that display potent in vitro agonism. MAbs 1:552–562
Eisenhardt SU, Schwarz M, Bassler N et al (2007) Subtractive single-chain antibody (scFv) phage-display: tailoring phage-display for high specificity against function-specific conformations of cell membrane molecules. Nat Protoc 2:3063–3073
Huie MA, Cheung MC, Muench MO et al (2001) Antibodies to human fetal erythroid cells from a nonimmune phage antibody library. Proc Natl Acad Sci USA 98:2682–2687
Noronha EJ, Wang X, Desai SA et al (1998) Limited diversity of human scFv fragments isolated by panning a synthetic phage-display scFv library with cultured human melanoma cells. J Immunol 161:2968–2976
Ridgway JB, Ng E, Kern JA et al (1999) Identification of a human anti-CD55 single-chain Fv by subtractive panning of a phage library using tumor and nontumor cell lines. Cancer Res 59:2718–2723
Van Ewijk W, de Kruif J, Germeraad WT et al (1997) Subtractive isolation of phage-displayed single-chain antibodies to thymic stromal cells by using intact thymic fragments. Proc Natl Acad Sci USA 94:3903–3908
Giordano RJ, Cardo-Vila M, Lahdenranta J et al (2001) Biopanning and rapid analysis of selective interactive ligands. Nat Med 7:1249–1253
Williams BR, Sharon J (2002) Polyclonal anti-colorectal cancer Fab phage display library selected in one round using density gradient centrifugation to separate antigen-bound and free phage. Immunol Lett 81:141–148
Osbourn JK, Derbyshire EJ, Vaughan TJ et al (1998) Pathfinder selection: in situ isolation of novel antibodies. Immunotechnology 3:293–302
Osbourn JK, Earnshaw JC, Johnson KS et al (1998) Directed selection of MIP-1 alpha neutralizing CCR5 antibodies from a phage display human antibody library. Nat Biotechnol 16:778–781
Poul MA, Becerril B, Nielsen UB et al (2000) Selection of tumor-specific internalizing human antibodies from phage libraries. J Mol Biol 301:1149–1161
Zhou Y, Marks JD (2009) Identification of target and function specific antibodies for effective drug delivery. Methods Mol Biol 525:145–160
Crépin R, Goenaga AL, Jullienne B et al (2010) Development of human single-chain antibodies to the transferrin receptor t, hat effectively antagonize the growth of leukemias and lymphomas. Cancer Res 70:5497–5506
Park JW, Kirpotin DB, Hong K et al (2001) Tumor targeting using anti-her2 immunoliposomes. J Control Release 74:95–113
Nielsen UB, Kirpotin DB, Pickering EM et al (2002) Therapeutic efficacy of anti-ErbB2 immunoliposomes targeted by a phage antibody selected for cellular endocytosis. Biochim Biophys Acta 1591:109–118
Velappan N, Martinez JS, Valero R et al (2007) Selection and characterization of scFv antibodies against the Sin Nombre hantavirus nucleocapsid protein. J Immunol Methods 321:60–69
Cabezas S, Rojas G, Pavon A et al (2009) Phage-displayed antibody fragments recognizing dengue 3 and dengue 4 viruses as tools for viral serotyping in sera from infected individuals. Arch Virol 154:1035–1045
Cabezas S, Rojas G, Pavon A et al (2008) Selection of phage-displayed human antibody fragments on Dengue virus particles captured by a monoclonal antibody: application to the four serotypes. J Virol Methods 147:235–243
Lim AP, Chan CE, Wong SK et al (2008) Neutralizing human monoclonal antibody against H5N1 influenza HA selected from a Fab-phage display library. Virol J 5:130
Okada J, Ohshima N, Kubota-Koketsu R et al (2010) Monoclonal antibodies in man that neutralized H3N2 influenza viruses were classified into three groups with distinct strain specificity: 1968–1973, 1977–1993 and 1997–2003. Virology 397:322–330
Meissner F, Maruyama T, Frentsch M et al (2002) Detection of antibodies against the four subtypes of ebola virus in sera from any species using a novel antibody-phage indicator assay. Virology 300:236–243
Kirsch MI, Hülseweh B, Nacke C et al (2008) Development of human antibody fragments using antibody phage display for the detection and diagnosis of Venezuelan equine encephalitis virus (VEEV). BMC Biotechnol 8:66
Hayhurst A, Happe S, Mabry R et al (2003) Isolation and expression of recombinant antibody fragments to the biological warfare pathogen Brucella melitensis. J Immunol Methods 276:185–196
Zou N, Newsome T, Li B et al (2007) Human single-chain Fv antibodies against Burkholderia mallei and Burkholderia pseudomallei. Exp Biol Med (Maywood) 232:550–556
Maynard JA, Maassen CB, Leppla SH et al (2002) Protection against anthrax toxin by recombinant antibody fragments correlates with antigen affinity. Nat Biotechnol 20:597–601
Wild MA, Xin H, Maruyama T et al (2003) Human antibodies from immunized donors are protective against anthrax toxin in vivo. Nat Biotechnol 21:1305–1306
Steiniger SC, Altobell LJ 3rd, Zhou B, Janda KD (2007) Selection of human antibodies against cell surface-associated oligomeric anthrax protective antigen. Mol Immunol 44:2749–2755
Pelat T, Hust M, Laffly E et al (2007) High-affinity, human antibody-like antibody fragment (single-chain variable fragment) neutralizing the lethal factor (LF) of Bacillus anthracis by inhibiting protective antigen-LF complex formation. Antimicrob Agents Chemother 51:2758–2764
Cirino NM, Sblattero D, Allen D et al (1999) Disruption of anthrax toxin binding with the use of human antibodies and competitive inhibitors. Infect Immun 67:2957–2963
Zhou B, Wirsching P, Janda KD (2002) Human antibodies against spores of the genus Bacillus: a model study for detection of and protection against anthrax and the bioterrorist threat. Proc Natl Acad Sci USA 99:5241–5246
Sui J, Hwang WC, Perez S et al (2009) Structural and functional bases for broad-spectrum neutralization of avian and human influenza A viruses. Nat Struct Mol Biol 16:265–273
Sun L, Lu X, Li C et al (2009) Generation, characterization and epitope mapping of two neutralizing and protective human recombinant antibodies against influenza A H5N1 viruses. PLoS One 4:e5476
Throsby M, van den Brink E, Jongeneelen M et al (2008) Heterosubtypic neutralizing monoclonal antibodies cross-protective against H5N1 and H1N1 recovered from human IgM + memory B cells. PLoS One 3:e3942
Ayriss J, Woods T, Bradbury A, Pavlik P (2007) High-throughput screening of single-chain antibodies using multiplexed flow cytometry. J Proteome Res 6:1072–1082
Pershad K, Pavlovic JD, Gräslund S et al (2010) Generating a panel of highly specific antibodies to 20 human SH2 domains by phage display. Protein Eng Des Sel 23:279–288
Parsons HL, Earnshaw JC, Wilton J et al (1996) Directing phage selections towards specific epitopes. Protein Eng 9:1043–1049
Mutuberria R, Satijn S, Huijbers A et al (2004) Isolation of human antibodies to tumor-associated endothelial cell markers by in vitro human endothelial cell selection with phage display libraries. J Immunol Methods 287:31–47
Cohen CJ, Denkberg G, Lev A et al (2003) Recombinant antibodies with MHC-restricted, peptide-specific, T-cell receptor-like specificity: new tools to study antigen presentation and TCR-peptide-MHC interactions. J Mol Recognit 16:324–332
Engberg J, Krogsgaard M, Fugger L (1999) Recombinant antibodies with the antigen-specific, MHC restricted specificity of T cells: novel reagents for basic and clinical investigations and immunotherapy. Immunotechnology 4:273–278
Stryhn A, Andersen PS, Pedersen LO et al (1996) Shared fine specificity between T-cell receptors and an antibody recognizing a peptide/major histocompatibility class I complex. Proc Natl Acad Sci USA 93:10338–10342
Villa A, Trachsel E, Kaspar M et al (2008) A high-affinity human monoclonal antibody specific to the alternatively spliced EDA domain of fibronectin efficiently targets tumor neo-vasculature in vivo. Int J Cancer 122:2405–2413
Pini A, Viti F, Santucci A et al (1998) Design and use of a phage display library. Human antibodies with subnanomolar affinity against a marker of angiogenesis eluted from a two-dimensional gel. J Biol Chem 273:21769–21776
Schliemann C, Neri D (2010) Antibody-based vascular tumor targeting. Recent Results Cancer Res 180:201–216
Nizak C, Monier S, del Nery E et al (2003) Recombinant antibodies to the small GTPase Rab6 as conformation sensors. Science 300:984–987
Gao J, Sidhu SS, Wells JA (2009) Two-state selection of conformation-specific antibodies. Proc Natl Acad Sci USA 106:3071–3076
Eisenhardt SU, Schwarz M, Bassler N, Peter K (2007) Subtractive single-chain antibody (scFv) phage-display: tailoring phage-display for high specificity against function-specific conformations of cell membrane molecules. Nat Protoc 2:3063–3073
Rothlisberger D, Pos KM, Pluckthun A (2004) An antibody library for stabilizing and crystallizing membrane proteins - selecting binders to the citrate carrier CitS. FEBS Lett 564:340–348
Uysal S, Vásquez V, Tereshko V et al (2009) Crystal structure of full-length KcsA in its closed conformation. Proc Natl Acad Sci USA 106:6644–6649
Ye JD, Tereshko V, Frederiksen JK et al (2008) Synthetic antibodies for specific recognition and crystallization of structured RNA. Proc Natl Acad Sci USA 105:82–87
Koldobskaya Y, Duguid EM, Shechner DM et al (2010) A portable RNA sequence whose recognition by a synthetic antibody facilitates structural determination. Nat Struct Mol Biol 18:100–106
Monigatti F, Gasteiger E, Bairoch A, Jung E (2002) The Sulfinator: predicting tyrosine sulfation sites in protein sequences. Bioinformatics 18:769–770
Kehoe JW, Velappan N, Walbolt M et al (2006) Using phage display to select antibodies recognizing post-translational modifications independently of sequence context. Mol Cell Proteomics 5:2350–2363
Thie H, Voedisch B, Dübel S et al (2009) Affinity maturation by phage display. Methods Mol Biol 525:309–322
Cadwell RC, Joyce GF (1994) Mutagenic PCR. PCR Methods Appl 3:S136–S140
Stemmer WP (1994) DNA shuffling by random fragmentation and reassembly: in vitro recombination for molecular evolution. Proc Natl Acad Sci USA 91:10747–10751
Fellouse FA, Wiesmann C, Sidhu SS (2004) Synthetic antibodies from a four-amino-acid code: a dominant role for tyrosine in antigen recognition. Proc Natl Acad Sci USA 101:12467–12472
Liang WC, Wu X, Peale FV et al (2006) Cross-species vascular endothelial growth factor (VEGF)-blocking antibodies completely inhibit the growth of human tumor xenografts and measure the contribution of stromal VEGF. J Biol Chem 281:951–961
Lee CV, Hymowitz SG, Wallweber HJ et al (2006) Synthetic anti-BR3 antibodies that mimic BAFF binding and target both human and murine B cells. Blood 108:3103–3111
Fagète S, Ravn U, Gueneau F et al (2009) Specificity tuning of antibody fragments to neutralize two human chemokines with a single agent. MAbs 1:288–296
Bostrom J, Yu SF, Kan D et al (2009) Variants of the antibody herceptin that interact with HER2 and VEGF at the antigen binding site. Science 323:1610–1614
Volk WA, Bizzini B, Snyder RM et al (1984) Neutralization of tetanus toxin by distinct monoclonal antibodies binding to multiple epitopes on the toxin molecule. Infect Immun 45:604–609
Zwick MB, Labrijn AF, Wang M et al (2001) Broadly neutralizing antibodies targeted to the membrane-proximal external region of human immunodeficiency virus type 1 glycoprotein gp41. J Virol 75:10892–10905
Cheson BD, Leonard JP (2008) Monoclonal antibody therapy for B-cell non-Hodgkin’s lymphoma. N Eng J Med 359:613–626
de Kruif J, Logtenberg T (1996) Leucine zipper dimerized bivalent and bispecific scFv antibodies from a semi-synthetic antibody phage display library. J Biol Chem 271: 7630–7634
Thie H, Binius S, Schirrmann T et al (2009) Multimerization domains for antibody phage display and antibody production. New Biotechnol 26:314–321
Hudson PJ, Kortt AA (1999) High avidity scFv multimers; diabodies and triabodies. J Immunol Methods 231:177–189
Dübel S, Breitling F, Kontermann R et al (1995) Bifunctional and multimeric complexes of streptavidin fused to single chain antibodies (scFv). J Immunol Methods 178:201–209
Huang D, Shusta EV (2006) A yeast platform for the production of single-chain antibody-green fluorescent protein fusions. Appl Environ Microbiol 72:7748–7759
Hink MA, Griep RA, Borst JW et al (2000) Structural dynamics of green fluorescent protein alone and fused with a single chain Fv protein. J Biol Chem 275:17556–17560
Casey JL, Coley AM, Tilley LM et al (2000) Green fluorescent antibodies: novel in vitro tools. Protein Eng 13:445–452
Griep RA, van Twisk C, Kerschbaumer RJ et al (1999) pSKAP/S: an expression vector for the production of single-chain Fv alkaline phosphatase fusion proteins. Protein Expr Purif 16:63–69
Al-Mrabeh A, Ziegler A, Cowan G et al (2009) A fully recombinant ELISA using in vivo biotinyla.ted antibody fragments for the detection of potato leafroll virus. J Virol Methods 159:200–205
Predonzani A, Arnoldi F, Lopez-Requena A et al (2008) In vivo site-specific biotinylation of proteins within the secretory pathway using a single vector system. BMC Biotechnol 8:41
Warren DJ, Bjerner J, Paus E et al (2005) Use of an in vivo biotinylated single-chain antibody as capture reagent in an immunometric assay to decrease the incidence of interference from heterophilic antibodies. Clin Chem 51: 830–838
Cloutier SM, Couty S, Terskikh A et al (2000) Streptabody, a high avidity molecule made by tetramerization of in vivo biotinylated, phage display-selected scFv fragments on streptavidin. Mol Immunol 37:1067–1077
Moutel S et al (2009) A multi-Fc-species system for recombinant antibody production. BMC Biotechnol 9:14
Hu S, Shively L, Raubitschek A et al (1996) Minibody: a novel engineered anti-carcinoembryonic antigen antibody fragment (single-chain Fv-CH3) which exhibits rapid, high-level targeting of xenografts. Cancer Res 56:3055–3061
Gilliland LK, Norris NA, Marquardt H et al (1996) Rapid and reliable cloning of antibody variable regions and generation of recombinant single chain antibody fragments. Tissue Antigens 47:1–20
Shan D, Press OW, Tsu TT et al (1999) Characterization of scFv-Ig constructs generated from the anti-CD20 mAb 1F5 using linker peptides of varying lengths. J Immunol 162:6589–6595
Kontermann RE (2010) Alternative antibody formats. Curr Opin Mol Ther 12:176–183
Merchant AM, Zhu Z, Yuan JQ et al (1998) An efficient route to human bispecific IgG. Nat Biotechnol 16:677–681
Ridgway JB, Presta LG et al (1996) ‘Knobs-into-holes’ engineering of antibody CH3 domains for heavy chain heterodimerization. Protein Eng 9:617–621
Coloma MJ, Morrison SL (1997) Design and production of novel tetravalent bispecific antibodies. Nat Biotechnol 15:159–163
Dong J, Sereno A, Snyder WB et al (2011) Stable IgG-like bispecific antibodies directed toward the type I insulin-like growth factor receptor demonstrate enhanced ligand blockade and anti-tumor activity. J Biol Chem 286:4703–4717
Kortt AA, Dolezal O, Power BE et al (2001) Dimeric and trimeric antibodies: high avidity scFvs for cancer targeting. Biomol Eng 18: 95–108
Lawrence LJ, Kortt AA, Iliades P et al (1998) Orientation of antigen binding sites in dimeric and trimeric single chain Fv antibody fragments. FEBS Lett 425:479–484
Perisic O, Webb PA, Holliger P et al (1994) Crystal structure of a diabody, a bivalent antibody fragment. Structure 2:1217–1226
Atwell JL, Breheney KA, Lawrence LJ et al (1999) scFv multimers of the anti-neuraminidase antibody NC10: length of the linker between VH and VL domains dictates precisely the transition between diabodies and triabodies. Protein Eng 12: 597–604
Pei XY, Holliger P, Murzin AG et al (1997) The 2.0-A resolution crystal structure of a trimeric antibody fragment with noncognate VH-VL domain pairs shows a rearrangement of VH CDR3. Proc Natl Acad Sci USA 94:9637–9642
Le Gall F, Kipriyanov SM, Moldenhauer G et al (1999) Di-, tri- and tetrameric single chain Fv antibody fragments against human CD19: effect of valency on cell binding. FEBS Lett 453:164–168
Muller D, Kontermann RE (2010) Bispecific antibodies for cancer immunotherapy: current perspectives. BioDrugs 24:89–98
Beck A, Wagner-Rousset E, Bussat MC et al (2008) Trends in glycosylation, glycoanalysis and glycoengineering of therapeutic antibodies and Fc-fusion proteins. Curr Pharm Biotechnol 9:482–501
Presta LG (2008) Molecular engineering and design of therapeutic antibodies. Curr Opin Immunol 20:460–470
Hallborn J, Carlsson R (2002) Automated screening procedure for high-throughput generation of antibody fragments. Biotechniques Suppl, 30–37
Lou J, Marzari R, Verzillo V et al (2001) Antibodies in haystacks: how selection strategy influences the outcome of selection from molecular diversity libraries. J Immunol Methods 253:233–242
Kawe M, Forrer P, Amstutz P et al (2006) Isolation of intracellular proteinase inhibitors derived from designed ankyrin repeat proteins by genetic screening. J Biol Chem 281: 40252–40263
Glanville J, Zhai W, Berka J et al (2009) Precise determination of the diversity of a combinatorial antibody library gives insight into the human immunoglobulin repertoire. Proc Natl Acad Sci USA 106:20216–20221
Ravn U, Gueneau F, Baerlocher L et al (2010) By-passing in vitro screening-next generation sequencing technologies applied to antibody display and in silico candidate selection. Nucleic Acids Res 38:e193
Ge X, Mazor Y, Hunicke-Smith SP et al (2010) Rapid construction and characterization of synthetic antibody libraries without DNA amplification. Biotechnol Bioeng 106: 347–357
Fischer N (2011) Sequencing antibody repertoires: the next generation. MAbs 3: 17–20
Reddy ST, Ge X, Miklos AE et al (2010) Monoclonal antibodies isolated without screening by analyzing the variable-gene repertoire of plasma cells. Nat Biotechnol 28: 965–969
Zhang H, Torkamani A, Jones TM et al (2011) Phenotype-information-phenotype cycle for deconvolution of combinatorial antibody libraries selected against complex systems. Proc Natl Acad Sci USA 108: 13456–13461
Bordeaux J, Welsh A, Agarwal S et al (2010) Antibody validation. Biotechniques 48: 197–209
Pozner-Moulis S, Cregger M, Camp RL et al (2007) Antibody validation by quantitative analysis of protein expression using expression of Met in breast cancer as a model. Lab Invest 87:251–260
Grimsey NL, Goodfellow CE, Scotter EL et al (2008) Specific detection of CB1 receptors; cannabinoid CB1 receptor antibodies are not all created equal! J Neurosci Methods 171:78–86
Saper CB (2005) An open letter to our readers on the use of antibodies. J Comp Neurol 493:477–478
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Geyer, C.R., McCafferty, J., Dübel, S., Bradbury, A.R.M., Sidhu, S.S. (2012). Recombinant Antibodies and In Vitro Selection Technologies. In: Proetzel, G., Ebersbach, H. (eds) Antibody Methods and Protocols. Methods in Molecular Biology, vol 901. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-61779-931-0_2
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