Skip to main content

Distributed Execution of Workflows in the INB

  • Conference paper
Data Integration in the Life Sciences (DILS 2006)

Part of the book series: Lecture Notes in Computer Science ((LNBI,volume 4075))

Included in the following conference series:

  • 507 Accesses

Abstract

Our workflow platform offers a view of the different tools available as a single and uniform pool of services readily available for enhancing query processing. This proposal is based on an architecture for publishing biological data and services, and is designed to be a flexible client for making use of BioMOBY servers, extending them with persistency of the information retrieved for each user. We also present in this paper some biological results, which have been obtained by taking advantage of the proposed workflow execution system. This work has been developed and implemented in the National Institute for Bioinformatics (INB) in Spain (available at http://www.inab.org/MOWServ).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Stevens, R.D., Baker, P.G., Bechhofer, S., Ng, G., Jacoby, A., Paton, N., Goble, C.A., Brass, A.: TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources. Bioinformatics 16(2), 184–186 (2000)

    Article  Google Scholar 

  2. Ludäscher, B., Gupta, A., Martone, M.E.: A Model Based Mediator System for Scientific Data Management. In: Lacroix, Z., Critchlow, T. (eds.) Bioinformatics: Managing Scientific Data, pp. 335–370 (2003)

    Google Scholar 

  3. Lange, M., Freier, A., Scholz, U., Stephanik, A.: A computational Support for Access to Integrated Molecular Biology Data (2001)

    Google Scholar 

  4. Gracy, J., Chiche, L.: PAT: a protein analysis toolkit for integrated biocomputing on the web. Nucl. Acids Res. 33, W65–W71 (2005)

    Google Scholar 

  5. Aldana, J.F., Hidalgo-Conde, M., Navas, I., Roldán, M.M., Trelles, O.: Bio-Broker: A biological data and services mediator system. In: IADIS International Conference, Applied Computing 2005, Algarve, Portugal, February 22-25, pp. 527–534 (2005)

    Google Scholar 

  6. Wilkinson, M.D., Gessler, D., Farmer, A., Stein, L.: The Bio-MOBY Project Explores Open-Source, Simple, Extensible Protocols for Enabling Biological Database Interoperability. In: Proceedings Virtual Conference Genomic and Bioinformatics, vol. (3), pp. 16–26 (2003) ISSN 1547-383X

    Google Scholar 

  7. Oinn, T., Addis, M., Ferris, J., Marvin, D., Senger, M., Greenwood, M., Carver, T., Glover, K., Pocock, M.R., Wipat, A., Li, P.: Taverna: A tool for the composition and enactment of bioinformatics workflows. Bioinformatics Journal 20(17), 3045–3054 (2004)

    Article  Google Scholar 

  8. Ponting, C.P.: Tudor domains in proteins that interact with RNA. Trends Biochem. Sci. 22, 51–52 (1997)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2006 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Navas-Delgado, I., PĂ©rez, A.J., Aldana-Montes, J.F., Trelles, O. (2006). Distributed Execution of Workflows in the INB. In: Leser, U., Naumann, F., Eckman, B. (eds) Data Integration in the Life Sciences. DILS 2006. Lecture Notes in Computer Science(), vol 4075. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11799511_20

Download citation

  • DOI: https://doi.org/10.1007/11799511_20

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-36593-8

  • Online ISBN: 978-3-540-36595-2

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics