Abstract
Type 1 diabetes (T1D) is an autoimmune disease caused by the interaction between genetic alterations and environmental factors. More than 60 susceptible genes or loci of T1D have been identified. Among them, HLA regions are reported to contribute about 50% of genetic susceptibility in Caucasians. There are many environmental factors involved in the pathogenesis of T1D. Environmental factors may change the expression of genes through epigenetic mechanisms, thus inducing individuals with susceptible genes to develop T1D; however, the underlying mechanisms remain poorly understood. The major epigenetic modifications include DNA methylation, histone modification, and non-coding RNA. There has been extensive research on the role of epigenetic mechanisms including aberrant DNA methylation, histone modification, and microRNA in the pathogenesis of T1D. DNA methylation and microRNA have been proposed as biomarkers to predict islet β cell death, which needs further confirmation before any clinical application can be developed. Small molecule inhibitors of histone deacetylases, histone methylation, and DNA methylation are potentially important for preventing T1D or in the reprogramming of insulin-producing cells. This chapter mainly focuses on T1D-related DNA methylation, histone modification, and non-coding RNA, as well as their possible translational potential in the early diagnosis and treatment of T1D.
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Agardh E et al (2015) Genome-wide analysis of DNA methylation in subjects with type 1 diabetes identifies epigenetic modifications associated with proliferative diabetic retinopathy. BMC Med 13:182
Aghazadeh Y, Nostro MC (2017) Cell therapy for type 1 diabetes: current and future strategies. Curr Diab Rep 17(6):37
Akerblom HK, Knip M (1998) Putative environmental factors in type 1 diabetes. Diabetes Metab Rev 14(1):31–67
Akira S, Takeda K (2004) Toll-like receptor signalling. Nat Rev Immunol 4(7):499–511
Akirav EM et al (2011) Detection of beta cell death in diabetes using differentially methylated circulating DNA. Proc Natl Acad Sci USA 108(47):19018–19023
Alisi A, Carsetti R, Nobili V (2011) Pathogen- or damage-associated molecular patterns during nonalcoholic fatty liver disease development. Hepatology 54(5):1500–1502
Alkanani AK et al (2015) Alterations in intestinal microbiota correlate with susceptibility to type 1 diabetes. Diabetes 64(10):3510–3520
Allis CD, Jenuwein T (2016) The molecular hallmarks of epigenetic control. Nat Rev Genet 17(8):487–500
American Diabetes Association (2018) 2. classification and diagnosis of diabetes: Standards of Medical Care in Diabetes-2018. Diabetes Care 41(Suppl 1):S13–S27
Ando T, Nishimura M, Oka Y (2000) Decitabine (5-Aza-2′-deoxycytidine) decreased DNA methylation and expression of MDR-1 gene in K562/ADM cells. Leukemia 14(11):1915–1920
Assmann TS et al (2017a) Polymorphisms in genes encoding miR-155 and miR-146a are associated with protection to type 1 diabetes mellitus. Acta Diabetol 54(5):433–441
Assmann TS et al (2017b) MicroRNA expression profiles and type 1 diabetes mellitus: systematic review and bioinformatic analysis. Endocr Connect 6(8):773–790
Atkinson MA, Chervonsky A (2012) Does the gut microbiota have a role in type 1 diabetes? Early evidence from humans and animal models of the disease. Diabetologia 55(11):2868–2877
Atkinson MA, Eisenbarth GS, Michels AW (2014) Type 1 diabetes. Lancet 383(9911):69–82
Atlan-Gepner C et al (1998) A cyclophosphamide-induced autoimmune diabetes. Lancet 352(9125):373–374
Backe MB et al (2018) Lysine demethylase inhibition protects pancreatic β cells from apoptosis and improves β-cell function. Mol Cell Endocrinol 460:47–56
Bannister AJ, Kouzarides T (2011) Regulation of chromatin by histone modifications. Cell Res 21(3):381–395
Bansal A, Pinney SE (2017) DNA methylation and its role in the pathogenesis of diabetes. Pediatr Diabetes 18(3):167–177
Barrett JC et al (2009) Genome-wide association study and meta-analysis find that over 40 loci affect risk of type 1 diabetes. Nat Genet 41(6):703–707
Bell CG et al (2010) Genome-wide DNA methylation analysis for diabetic nephropathy in type 1 diabetes mellitus. BMC Med Genomics 3:33
Belot MP et al (2013) CpG methylation changes within the IL2RA promoter in type 1 diabetes of childhood onset. PLoS One 8(7):e68093
Bernstein BE, Meissner A, Lander ES (2007) The mammalian epigenome. Cell 128(4):669–681
Bird A (2007) Perceptions of epigenetics. Nature 447(7143):396–398
Bonifacio E (2015) Predicting type 1 diabetes using biomarkers. Diabetes Care 38(6):989–996
Bottazzo GF, Florin-Christensen A, Doniach D (1974) Islet-cell antibodies in diabetes mellitus with autoimmune polyendocrine deficiencies. Lancet 2(7892):1279–1283
Bradfield JP et al (2011) A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci. PLoS Genet 7(9):e1002293
Bramswig NC et al (2013) Epigenomic plasticity enables human pancreatic α to β cell reprogramming. J Clin Invest 123(3):1275–1284
Brode S et al (2006) Cyclophosphamide-induced type-1 diabetes in the NOD mouse is associated with a reduction of CD4+ CD25+ Foxp3+ regulatory T cells. J Immunol 177(10):6603–6612
Brodsky I, Medzhitov R (2007) Two modes of ligand recognition by TLRs. Cell 130(6):979–981
Burrows MP et al (2015) Microbiota regulates type 1 diabetes through Toll-like receptors. Proc Natl Acad Sci USA 112(32):9973–9977
Castillo-Fernandez JE, Spector TD, Bell JT (2014) Epigenetics of discordant monozygotic twins: implications for disease. Genome Med 6(7):60
Cech TR, Steitz JA (2014) The noncoding RNA revolution-trashing old rules to forge new ones. Cell 157(1):77–94
Cedar H, Bergman Y (2009) Linking DNA methylation and histone modification: patterns and paradigms. Nat Rev Genet 10(5):295–304
Cepek P et al (2016) DNA methylation and mRNA expression of HLA-DQA1 alleles in type 1 diabetes mellitus. Immunology 148(2):150–159
Chen SS, Jenkins AJ, Majewski H (2009) Elevated plasma prostaglandins and acetylated histone in monocytes in type 1 diabetes patients. Diabet Med 26(2):182–186
Christensen DP et al (2014) Lysine deacetylase inhibition prevents diabetes by chromatin-independent immunoregulation and beta-cell protection. Proc Natl Acad Sci USA 111(3):1055–1059
Cooper JD et al (2008) Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci. Nat Genet 40(12):1399–1401
Coskun E, Ercin M, Gezginci-Oktayoglu S (2018) The role of epigenetic regulation and pluripotency-related MicroRNAs in differentiation of pancreatic stem cells to beta cells. J Cell Biochem 119(1):455–467
Curradi M et al (2002) Molecular mechanisms of gene silencing mediated by DNA methylation. Mol Cell Biol 22(9):3157–3173
Dang MN et al (2016) Methylation analysis in distinct immune cell subsets in type 1 diabetes. Methods Mol Biol 1433:143–151
Davies JL et al (1994) A genome-wide search for human type 1 diabetes susceptibility genes. Nature 371(6493):130–136
Dawson MA et al (2011) Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia. Nature 478(7370):529–533
de Goffau MC et al (2014) Aberrant gut microbiota composition at the onset of type 1 diabetes in young children. Diabetologia 57(8):1569–1577
de Jong VM et al (2016) Survival of autoreactive T lymphocytes by microRNA-mediated regulation of apoptosis through TRAIL and Fas in type 1 diabetes. Genes Immun 17(6):342–348
de Ruijter AJ et al (2003) Histone deacetylases (HDACs): characterization of the classical HDAC family. Biochem J 370(Pt 3):737–749
De Santis M, Selmi C (2012) The therapeutic potential of epigenetics in autoimmune diseases. Clin Rev Allergy Immunol 42(1):92–101
Desai M et al (2006) The variable number of tandem repeats upstream of the insulin gene is a susceptibility locus for latent autoimmune diabetes in adults. Diabetes 55(6):1890–1894
Desai M et al (2007) An association analysis of the HLA gene region in latent autoimmune diabetes in adults. Diabetologia 50(1):68–73
El Ouaamari A et al (2008) miR-375 targets 3′-phosphoinositide-dependent protein kinase-1 and regulates glucose-induced biological responses in pancreatic beta-cells. Diabetes 57(10):2708–2717
Elboudwarej E et al (2016) Hypomethylation within gene promoter regions and type 1 diabetes in discordant monozygotic twins. J Autoimmun 68:23–29
Endesfelder D et al (2014) Compromised gut microbiota networks in children with anti-islet cell autoimmunity. Diabetes 63(6):2006–2014
Erener S et al (2013) Circulating miR-375 as a biomarker of beta-cell death and diabetes in mice. Endocrinology 154(2):603–608
Erlich H et al (2008) HLA DR-DQ haplotypes and genotypes and type 1 diabetes risk: analysis of the type 1 diabetes genetics consortium families. Diabetes 57(4):1084–1092
Esteller M (2011) Non-coding RNAs in human disease. Nat Rev Genet 12(12):861–874
Farr RJ et al (2013) Circulating non-coding RNAs as biomarkers of beta cell death in diabetes. Pediatr Endocrinol Rev 11(1):14–20
Feil R, Fraga MF (2012) Epigenetics and the environment: emerging patterns and implications. Nat Rev Genet 13(2):97–109
Feng J et al (2010) Dnmt1 and Dnmt3a maintain DNA methylation and regulate synaptic function in adult forebrain neurons. Nat Neurosci 13(4):423–430
Filipowicz W, Bhattacharyya SN, Sonenberg N (2008) Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet 9(2):102–114
Filippakopoulos P et al (2010) Selective inhibition of BET bromodomains. Nature 468(7327):1067–1073
Floyel T, Kaur S, Pociot F (2015) Genes affecting beta-cell function in type 1 diabetes. Curr Diab Rep 15(11):97
Fortune MD et al (2015) Statistical colocalization of genetic risk variants for related autoimmune diseases in the context of common controls. Nat Genet 47(7):839–846
Fu W et al (2014) Epigenetic modulation of type-1 diabetes via a dual effect on pancreatic macrophages and beta cells. Elife 3:e04631
Gale EA (2005) Latent autoimmune diabetes in adults: a guide for the perplexed. Diabetologia 48(11):2195–2199
Groop L et al (2006) Latent autoimmune diabetes in adults (LADA)–more than a name. Diabetologia 49(9):1996–1998
Gu T et al (2014) Epigenetic analyses of the insulin-like growth factor binding protein 1 gene in type 1 diabetes and diabetic nephropathy. Clin Epigenetics 6(1):10
Gulden E, Wong FS, Wen L (2015) The gut microbiota and type 1 diabetes. Clin Immunol 159(2):143–153
Haumaitre C (2013) Epigenetic regulation of pancreatic islets. Curr Diab Rep 13(5):624–632
Haynes A et al (2018) Incidence of childhood onset type 1 diabetes in Western Australia from 1985 to 2016: evidence for a plateau. Pediatr Diabetes 19(4):690–692
He L, Hannon GJ (2004) MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet 5(7):522–531
He YF et al (2011) Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science 333(6047):1303–1307
Heinonen MT, Moulder R, Lahesmaa R (2015) New insights and biomarkers for type 1 diabetes: review for Scandinavian Journal of Immunology. Scand J Immunol 82(3):244–253
Hezova R et al (2010) microRNA-342, microRNA-191 and microRNA-510 are differentially expressed in T regulatory cells of type 1 diabetic patients. Cell Immunol 260(2):70–74
Hu X et al (2015) Additive and interaction effects at three amino acid positions in HLA-DQ and HLA-DR molecules drive type 1 diabetes risk. Nat Genet 47(8):898–905
Huang G et al (2013) Zinc transporter 8 autoantibody (ZnT8A) could help differentiate latent autoimmune diabetes in adults (LADA) from phenotypic type 2 diabetes mellitus. Diabetes Metab Res Rev 29(5):363–368
Husseiny MI et al (2012) Development of a quantitative methylation-specific polymerase chain reaction method for monitoring beta cell death in type 1 diabetes. PLoS One 7(10):e47942
Husseiny MI et al (2014) Tissue-specific methylation of human insulin gene and PCR assay for monitoring beta cell death. PLoS One 9(4):e94591
Hyttinen V et al (2003) Genetic liability of type 1 diabetes and the onset age among 22,650 young Finnish twin pairs: a nationwide follow-up study. Diabetes 52(4):1052–1055
Ichiyama K et al (2015) The methylcytosine dioxygenase Tet2 promotes DNA demethylation and activation of cytokine gene expression in T cells. Immunity 42(4):613–626
Imagawa A et al (2000) A novel subtype of type 1 diabetes mellitus characterized by a rapid onset and an absence of diabetes-related antibodies. Osaka IDDM Study Group. N Engl J Med 342(5):301–307
Issa JP (2007) DNA methylation as a therapeutic target in cancer. Clin Cancer Res 13(6):1634–1637
Jayaraman S (2011) Epigenetics of autoimmune diabetes. Epigenomics 3(5):639–648
Jayaraman S (2014) Novel methods of type 1 diabetes treatment. Discov Med 17(96):347–355
Jayaraman S et al (2013) Transcriptome analysis of epigenetically modulated genome indicates signature genes in manifestation of type 1 diabetes and its prevention in NOD mice. PLoS One 8(1):e55074
Jerram ST, Dang MN, Leslie RD (2017) The role of epigenetics in type 1 diabetes. Curr Diab Rep 17(10):89
Karlic R et al (2010) Histone modification levels are predictive for gene expression. Proc Natl Acad Sci USA 107(7):2926–2931
Katsarou A et al (2017) Type 1 diabetes mellitus. Nat Rev Dis Primers 3:17016
Katz LS, Geras-Raaka E, Gershengorn MC (2013) Reprogramming adult human dermal fibroblasts to islet-like cells by epigenetic modification coupled to transcription factor modulation. Stem Cells Dev 22(18):2551–2560
Kawai T, Akira S (2007) Signaling to NF-kappaB by toll-like receptors. Trends Mol Med 13(11):460–469
Kemppainen KM et al (2015) Early childhood gut microbiomes show strong geographic differences among subjects at high risk for type 1 diabetes. Diabetes Care 38(2):329–332
Khan S, Jena G (2016) Valproic acid improves glucose homeostasis by increasing beta-cell proliferation, function, and reducing its apoptosis through HDAC inhibition in juvenile diabetic rat. J Biochem Mol Toxicol 30(9):438–446
Kitagawa Y, Ohkura N (2014) Treating type-1 diabetes with an epigenetic drug. Elife 3:e05720
Klinke DJ 2nd (2008) Extent of beta cell destruction is important but insufficient to predict the onset of type 1 diabetes mellitus. PLoS One 3(1):e1374
Knip M, Siljander H (2016) The role of the intestinal microbiota in type 1 diabetes mellitus. Nat Rev Endocrinol 12(3):154–167
Knip M, Simell O (2012) Environmental triggers of type 1 diabetes. Cold Spring Harb Perspect Med 2(7):a007690
Knip M et al (2005) Environmental triggers and determinants of type 1 diabetes. Diabetes 54(Suppl 2):S125–S136
Kostic AD et al (2015) The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes. Cell Host Microbe 17(2):260–273
Kretsovali A, Hadjimichael C, Charmpilas N (2012) Histone deacetylase inhibitors in cell pluripotency, differentiation, and reprogramming. Stem Cells Int 2012:184154
Kroon E et al (2008) Pancreatic endoderm derived from human embryonic stem cells generates glucose-responsive insulin-secreting cells in vivo. Nat Biotechnol 26(4):443–452
Kubota T, Miyake K, Hirasawa T (2012) Epigenetic understanding of gene-environment interactions in psychiatric disorders: a new concept of clinical genetics. Clin Epigenetics 4(1):1
Kugelberg E (2017) Microbiota: diet can protect against type 1 diabetes. Nat Rev Immunol 17(5):279
Kuo MH, Allis CD (1998) Roles of histone acetyltransferases and deacetylases in gene regulation. BioEssays 20(8):615–626
Kyvik KO, Green A, Beck-Nielsen H (1995) Concordance rates of insulin dependent diabetes mellitus: a population based study of young Danish twins. BMJ 311(7010):913–917
Lebastchi J et al (2013) Immune therapy and beta-cell death in type 1 diabetes. Diabetes 62(5):1676–1680
Lehuen A (2015) A double-edged sword against type 1 diabetes. N Engl J Med 372(8):778–780
Lehuen A et al (2010) Immune cell crosstalk in type 1 diabetes. Nat Rev Immunol 10(7):501–513
Leoni F et al (2002) The antitumor histone deacetylase inhibitor suberoylanilide hydroxamic acid exhibits antiinflammatory properties via suppression of cytokines. Proc Natl Acad Sci USA 99(5):2995–3000
Leoni F et al (2005) The histone deacetylase inhibitor ITF2357 reduces production of pro-inflammatory cytokines in vitro and systemic inflammation in vivo. Mol Med 11(1–12):1–15
Lewis EC et al (2011) The oral histone deacetylase inhibitor ITF2357 reduces cytokines and protects islet β cells in vivo and in vitro. Mol Med 17(5–6):369–377
Li B, Carey M, Workman JL (2007) The role of chromatin during transcription. Cell 128(4):707–719
Li Y et al (2011) Abnormal DNA methylation in CD4+ T cells from people with latent autoimmune diabetes in adults. Diabetes Res Clin Pract 94(2):242–248
Licht JD (2015) DNA methylation inhibitors in cancer therapy: the immunity dimension. Cell 162(5):938–939
Liu XY, Li H (2017) Reduced histone H3 lysine 9 methylation contributes to the pathogenesis of latent autoimmune diabetes in adults via regulation of SUV39H2 and KDM4C. J Diabetes Res 2017:8365762
Liu L et al (2015) Latent autoimmune diabetes in adults with low-titer GAD antibodies: similar disease progression with type 2 diabetes: a nationwide, multicenter prospective study (LADA China Study 3). Diabetes Care 38(1):16–21
Livanos AE et al (2016) Antibiotic-mediated gut microbiome perturbation accelerates development of type 1 diabetes in mice. Nat Microbiol 1(11):16140
Lundh M et al (2012) Histone deacetylases 1 and 3 but not 2 mediate cytokine-induced beta cell apoptosis in INS-1 cells and dispersed primary islets from rats and are differentially regulated in the islets of type 1 diabetic children. Diabetologia 55(9):2421–2431
Luo S et al (2016) HLA genetic discrepancy between latent autoimmune diabetes in adults and type 1 diabetes: LADA China Study No. 6. J Clin Endocrinol Metab 101(4):1693–1700
MacFarlane AJ, Strom A, Scott FW (2009) Epigenetics: deciphering how environmental factors may modify autoimmune type 1 diabetes. Mamm Genome 20(9–10):624–632
Manzar GS, Kim EM, Zavazava N (2017) Demethylation of induced pluripotent stem cells from type 1 diabetic patients enhances differentiation into functional pancreatic beta cells. J Biol Chem 292(34):14066–14079
Marchand L et al (2016) miRNA-375 a sensor of glucotoxicity is altered in the serum of children with newly diagnosed type 1 diabetes. J Diabetes Res 2016:1869082
Marino E et al (2017) Gut microbial metabolites limit the frequency of autoimmune T cells and protect against type 1 diabetes. Nat Immunol 18(5):552–562
Mayer-Davis EJ et al (2017) Incidence trends of type 1 and type 2 diabetes among youths, 2002–2012. N Engl J Med 376(15):1419–1429
McClymont SA et al (2011) Plasticity of human regulatory T cells in healthy subjects and patients with type 1 diabetes. J Immunol 186(7):3918–3926
McLaughlin KA et al (2016) Identification of tetraspanin-7 as a target of autoantibodies in type 1 diabetes. Diabetes 65(6):1690–1698
Meier BC, Wagner BK (2014) Inhibition of HDAC3 as a strategy for developing novel diabetes therapeutics. Epigenomics 6(2):209–214
Merlo A et al (1995) 5′ CpG island methylation is associated with transcriptional silencing of the tumour suppressor p16/CDKN2/MTS1 in human cancers. Nat Med 1(7):686–692
Meylan E, Tschopp J, Karin M (2006) Intracellular pattern recognition receptors in the host response. Nature 442(7098):39–44
Miao F et al (2008) Lymphocytes from patients with type 1 diabetes display a distinct profile of chromatin histone H3 lysine 9 dimethylation: an epigenetic study in diabetes. Diabetes 57(12):3189–3198
Miao F et al (2012) Profiles of epigenetic histone post-translational modifications at type 1 diabetes susceptible genes. J Biol Chem 287(20):16335–16345
Milanesi A et al (2011) Differentiation of nestin-positive cells derived from bone marrow into pancreatic endocrine and ductal cells in vitro. J Endocrinol 209(2):193–201
Millman JR et al (2016) Generation of stem cell-derived beta-cells from patients with type 1 diabetes. Nat Commun 7:11463
Mimbacas A et al (2004) The association between HLA DQ genetic polymorphism and type 1 diabetes in a case-parent study conducted in an admixed population. Eur J Epidemiol 19(10):931–934
Needell JC, Zipris D (2016) The role of the intestinal microbiome in type 1 diabetes pathogenesis. Curr Diab Rep 16(10):89
Neiman D et al (2017) Islet cells share promoter hypomethylation independently of expression, but exhibit cell-type-specific methylation in enhancers. Proc Natl Acad Sci USA 114(51):13525–13530
Nielsen LB et al (2012) Circulating levels of microRNA from children with newly diagnosed type 1 diabetes and healthy controls: evidence that miR-25 associates to residual beta-cell function and glycaemic control during disease progression. Exp Diabetes Res 2012:896362
Noble JA, Erlich HA (2012) Genetics of type 1 diabetes. Cold Spring Harb Perspect Med 2(1):a007732
Noble JA et al (1996) The role of HLA class II genes in insulin-dependent diabetes mellitus: molecular analysis of 180 Caucasian, multiplex families. Am J Hum Genet 59(5):1134–1148
Notkins AL, Lernmark A (2001) Autoimmune type 1 diabetes: resolved and unresolved issues. J Clin Invest 108(9):1247–1252
Oka M et al (2005) De novo DNA methyltransferases Dnmt3a and Dnmt3b primarily mediate the cytotoxic effect of 5-aza-2′-deoxycytidine. Oncogene 24(19):3091–3099
Okano M et al (1999) DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell 99(3):247–257
Olmos P et al (1988) The significance of the concordance rate for type 1 (insulin-dependent) diabetes in identical twins. Diabetologia 31(10):747–750
Olsen JA et al (2016) Circulating differentially methylated amylin DNA as a biomarker of beta-cell loss in type 1 diabetes. PLoS One 11(4):e0152662
Onengut-Gumuscu S et al (2015) Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers. Nat Genet 47(4):381–386
Orban T et al (2007) Reduced CD4+ T-cell-specific gene expression in human type 1 diabetes mellitus. J Autoimmun 28(4):177–187
Orom UA, Shiekhattar R (2013) Long noncoding RNAs usher in a new era in the biology of enhancers. Cell 154(6):1190–1193
Osipova J et al (2014) Diabetes-associated microRNAs in pediatric patients with type 1 diabetes mellitus: a cross-sectional cohort study. J Clin Endocrinol Metab 99(9):E1661–E1665
Pagliuca FW et al (2014) Generation of functional human pancreatic beta cells in vitro. Cell 159(2):428–439
Palazzo AF, Lee ES (2015) Non-coding RNA: what is functional and what is junk? Front Genet 6:2
Patel T et al (2011) Chromatin remodeling resets the immune system to protect against autoimmune diabetes in mice. Immunol Cell Biol 89(5):640–649
Patterson CC et al (2009) Incidence trends for childhood type 1 diabetes in Europe during 1989–2003 and predicted new cases 2005–20: a multicentre prospective registration study. Lancet 373(9680):2027–2033
Paul DS et al (2016) Increased DNA methylation variability in type 1 diabetes across three immune effector cell types. Nat Commun 7:13555
Paun A, Yau C, Danska JS (2017) The influence of the microbiome on type 1 diabetes. J Immunol 198(2):590–595
Pearson JA, Wong FS, Wen L (2016) The importance of the non obese diabetic (NOD) mouse model in autoimmune diabetes. J Autoimmun 66:76–88
Pennarossa G et al (2013) Brief demethylation step allows the conversion of adult human skin fibroblasts into insulin-secreting cells. Proc Natl Acad Sci USA 110(22):8948–8953
Pfeifer GP (2016) Epigenetics: an elusive DNA base in mammals. Nature 532(7599):319–320
Pileggi A et al (2013) MicroRNAs in islet immunobiology and transplantation. Immunol Res 57(1–3):185–196
Pociot F (2017) Type 1 diabetes genome-wide association studies: not to be lost in translation. Clin Transl Immunol 6(12):e162
Pociot F et al (2010) Genetics of type 1 diabetes: what’s next? Diabetes 59(7):1561–1571
Poy MN et al (2009) miR-375 maintains normal pancreatic α- and β-cell mass. Proc Natl Acad Sci USA 106(14):5813–5818
Pozzilli P, Di Mario U (2001) Autoimmune diabetes not requiring insulin at diagnosis (latent autoimmune diabetes of the adult): definition, characterization, and potential prevention. Diabetes Care 24(8):1460–1467
Qin K et al (2018) SIRT6-mediated transcriptional suppression of Txnip is critical for pancreatic beta cell function and survival in mice. Diabetologia 61(4):906–918
Rakyan VK et al (2011) Identification of type 1 diabetes-associated DNA methylation variable positions that precede disease diagnosis. PLoS Genet 7(9):e1002300
Redondo MJ et al (2001) Heterogeneity of type I diabetes: analysis of monozygotic twins in Great Britain and the United States. Diabetologia 44(3):354–362
Rewers M, Ludvigsson J (2016) Environmental risk factors for type 1 diabetes. Lancet 387(10035):2340–2348
Rezania A et al (2014) Reversal of diabetes with insulin-producing cells derived in vitro from human pluripotent stem cells. Nat Biotechnol 32(11):1121–1133
Riddihough G, Zahn LM (2010) Epigenetics. What is epigenetics? Introduction. Science 330(6004):611
Risch N (1987) Assessing the role of HLA-linked and unlinked determinants of disease. Am J Hum Genet 40(1):1–14
Salas-Perez F et al (2013) MicroRNAs miR-21a and miR-93 are down regulated in peripheral blood mononuclear cells (PBMCs) from patients with type 1 diabetes. Immunobiology 218(5):733–737
Samandari N et al (2017) Circulating microRNA levels predict residual beta cell function and glycaemic control in children with type 1 diabetes mellitus. Diabetologia 60(2):354–363
Santin I, Eizirik DL (2013) Candidate genes for type 1 diabetes modulate pancreatic islet inflammation and beta-cell apoptosis. Diabetes Obes Metab 15(Suppl 3):71–81
Seal J et al (2012) Identification of a novel series of BET family bromodomain inhibitors: binding mode and profile of I-BET151 (GSK1210151A). Bioorg Med Chem Lett 22(8):2968–2972
Sebastiani G et al (2011) Increased expression of microRNA miR-326 in type 1 diabetic patients with ongoing islet autoimmunity. Diabetes Metab Res Rev 27(8):862–866
She JX, Marron MP (1998) Genetic susceptibility factors in type 1 diabetes: linkage, disequilibrium and functional analyses. Curr Opin Immunol 10(6):682–689
Sklenarova J et al (2017) Glucokinase gene may be a more suitable target than the insulin gene for detection of beta cell death. Endocrinology 158(7):2058–2065
Snowhite IV et al (2017) Association of serum microRNAs with islet autoimmunity, disease progression and metabolic impairment in relatives at risk of type 1 diabetes. Diabetologia 60(8):1409–1422
Sordi V, Pellegrini S, Piemonti L (2017) Immunological issues after stem cell-based β cell replacement. Curr Diab Rep 17(9):68
Sosenko JM et al (2015) A new approach for diagnosing type 1 diabetes in autoantibody-positive individuals based on prediction and natural history. Diabetes Care 38(2):271–276
Speed D et al (2012) Improved heritability estimation from genome-wide SNPs. Am J Hum Genet 91(6):1011–1021
Stefan M et al (2014) DNA methylation profiles in type 1 diabetes twins point to strong epigenetic effects on etiology. J Autoimmun 50:33–37
Stenstrom G et al (2005) Latent autoimmune diabetes in adults: definition, prevalence, beta-cell function, and treatment. Diabetes 54(Suppl 2):S68–S72
Storling J, Brorsson CA (2013) Candidate genes expressed in human islets and their role in the pathogenesis of type 1 diabetes. Curr Diab Rep 13(5):633–641
Storling J, Pociot F (2017) Type 1 diabetes candidate genes linked to pancreatic islet cell inflammation and beta-cell apoptosis. Genes (Basel) 8(2):72
Strahl BD, Allis CD (2000) The language of covalent histone modifications. Nature 403(6765):41–45
Tai N, Wong FS, Wen L (2016) The role of the innate immune system in destruction of pancreatic beta cells in NOD mice and humans with type I diabetes. J Autoimmun 71:26–34
Todd JA et al (2007) Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes. Nat Genet 39(7):857–864
Tuomi T et al (1993) Antibodies to glutamic acid decarboxylase reveal latent autoimmune diabetes mellitus in adults with a non-insulin-dependent onset of disease. Diabetes 42(2):359–362
Walker LS, von Herrath M (2016) CD4 T cell differentiation in type 1 diabetes. Clin Exp Immunol 183(1):16–29
Walther D et al (2016) Tetraspanin 7 autoantibodies in type 1 diabetes. Diabetologia 59(9):1973–1976
Wang Z et al (2013) DNA methylation impairs TLR9 induced Foxp3 expression by attenuating IRF-7 binding activity in fulminant type 1 diabetes. J Autoimmun 41:50–59
Wang Z et al (2017) Beyond genetics: what causes type 1 diabetes. Clin Rev Allergy Immunol 52(2):273–286
Wellcome Trust Case Control Consortium (2007) Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 447(7145):661–678
Wen L et al (2008) Innate immunity and intestinal microbiota in the development of Type 1 diabetes. Nature 455(7216):1109–1113
Weng J et al (2018) Incidence of type 1 diabetes in China, 2010–13: population based study. BMJ 360:j5295
Willcox A et al (2009) Analysis of islet inflammation in human type 1 diabetes. Clin Exp Immunol 155(2):173–181
Wu SC, Zhang Y (2010) Active DNA demethylation: many roads lead to Rome. Nat Rev Mol Cell Biol 11(9):607–620
Xie Z, Chang C, Zhou Z (2014) Molecular mechanisms in autoimmune type 1 diabetes: a critical review. Clin Rev Allergy Immunol 47(2):174–192
Yang CS, Li Z, Rana TM (2011) microRNAs modulate iPS cell generation. RNA 17(8):1451–1460
Yang M et al (2015) Decreased miR-146 expression in peripheral blood mononuclear cells is correlated with ongoing islet autoimmunity in type 1 diabetes patients 1miR-146. J Diabetes 7(2):158–165
Yi SA et al (2018) S6K1 controls epigenetic plasticity for the expression of pancreatic α/β cell marker genes. J Cell Biochem 119(8):6674–6683
Zhang Y et al (2016) MicroRNAs in CD4(+) T cell subsets are markers of disease risk and T cell dysfunction in individuals at risk for type 1 diabetes. J Autoimmun 68:52–61
Zhang K et al (2017) Circulating unmethylated insulin DNA as a potential non-invasive biomarker of beta cell death in type 1 diabetes: a review and future prospect. Clin Epigenetics 9:44
Zheng Y, Wang Z, Zhou Z (2017) miRNAs: novel regulators of autoimmunity-mediated pancreatic β-cell destruction in type 1 diabetes. Cell Mol Immunol 14(6):488–496
Zheng Q et al (2009) Induction of Foxp3 demethylation increases regulatory CD4+ CD25+ T cells and prevents the occurrence of diabetes in mice. J Mol Med (Berl) 87(12):1191–1205
Zhou Z et al (2013) Frequency, immunogenetics, and clinical characteristics of latent autoimmune diabetes in China (LADA China study): a nationwide, multicenter, clinic-based cross-sectional study. Diabetes 62(2):543–550
Zipris D (2008) Innate immunity and its role in type 1 diabetes. Curr Opin Endocrinol Diabetes Obes 15(4):326–331
Zullo A et al (2017) Epigenetics and type 1 diabetes: mechanisms and translational applications. Transl Res 185:85–93
Acknowledgements
This work was supported by grants from the National Key Research and Development Program of China (2016YFC1305000); the National Natural Science Foundation of China (No. 81873634, 81400783); the National Key Technology R&D program (2015BAI12B13).
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Xie, Z., Chang, C., Huang, G., Zhou, Z. (2020). The Role of Epigenetics in Type 1 Diabetes. In: Chang, C., Lu, Q. (eds) Epigenetics in Allergy and Autoimmunity. Advances in Experimental Medicine and Biology, vol 1253. Springer, Singapore. https://doi.org/10.1007/978-981-15-3449-2_9
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